forked from UTulsa-Research/ag_gen
Fixing early stoppage
This commit is contained in:
parent
b9735af8cb
commit
88394b7779
2188
build/DOTFILE.dot
2188
build/DOTFILE.dot
File diff suppressed because it is too large
Load Diff
@ -48,19 +48,19 @@ cmake_force:
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SHELL = /bin/sh
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# The CMake executable.
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# The command to remove a file.
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RM = /usr/bin/cmake -E rm -f
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RM = /storage/home/nschrick/pkg/cmake/3.22.0/bin/cmake -E rm -f
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# Escaping for special characters.
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EQUALS = =
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# The top-level source directory on which CMake was run.
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CMAKE_SOURCE_DIR = "/home/noah/Documents/School/Thesis Work/ag_parallel"
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CMAKE_SOURCE_DIR = /home/nschrick/ag_parallel
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# The top-level build directory on which CMake was run.
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CMAKE_BINARY_DIR = /home/nschrick/ag_parallel/build
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#=============================================================================
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@ -68,7 +68,7 @@ CMAKE_BINARY_DIR = "/home/noah/Documents/School/Thesis Work/ag_parallel/build"
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@ -78,7 +78,7 @@ edit_cache/fast: edit_cache
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@ -87,9 +87,9 @@ rebuild_cache/fast: rebuild_cache
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@ -142,19 +129,6 @@ ag_gen/fast:
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@ -665,7 +615,6 @@ src/util/mem.o: src/util/mem.c.o
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@ -674,7 +623,6 @@ src/util/mem.i: src/util/mem.c.i
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@ -683,7 +631,6 @@ src/util/mem.s: src/util/mem.c.s
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@ -814,9 +761,7 @@ help:
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@echo "... depend"
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@echo "... edit_cache"
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@echo "... rebuild_cache"
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@ -859,9 +804,6 @@ help:
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16422
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Load Diff
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Before Width: | Height: | Size: 785 KiB After Width: | Height: | Size: 788 KiB |
BIN
build/ag_gen
BIN
build/ag_gen
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@ -7,7 +7,7 @@
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#SBATCH --exclude=compute02,compute03,compute09
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#SBATCH --export=ALL
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#SBATCH --nodelist=compute10,compute11,compute12
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#SBATCH --nodelist=compute10,compute11,compute12,compute07,compute08,compute04,compute05,compute01
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export LD_LIBRARY_PATH=/home/nschrick/pkg/postgresql/13.4/lib
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MPICH_NEMESIS_NETMOD=ofi
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@ -19,7 +19,7 @@ TYPE=${2:-sync}
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CARS=${3:-2}
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DBNAME=${4:-tmp}
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NUM_THREADS=${5:-1}
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NODES=${6:-4}
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NODES=${6:-13}
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module load graphviz
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module load gcc
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@ -1,142 +1,132 @@
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"command": "/opt/apps/gcc/8.2.0/bin/g++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -I/usr/include/postgresql -I/home/nschrick/ag_parallel/src -isystem /home/nschrick/pkg/boost/1.77.0/include -isystem /storage/home/nschrick/pkg/openmpi/4.1.2/include -isystem /home/nschrick/pkg/openmpi/4.1.2/include -std=c++14 -fopenmp -g -g -O0 -ggdb -Wall -fopenmp -pedantic -pthread -o CMakeFiles/ag_gen.dir/src/util/redis_manager.cpp.o -c /home/nschrick/ag_parallel/src/util/redis_manager.cpp",
|
||||
"file": "/home/nschrick/ag_parallel/src/util/redis_manager.cpp"
|
||||
},
|
||||
{
|
||||
"directory": "/home/noah/Documents/School/Thesis Work/ag_parallel/build",
|
||||
"command": "/usr/bin/cc -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -I/usr/include/postgresql -I\"/home/noah/Documents/School/Thesis Work/ag_parallel/src\" -g -pthread -o CMakeFiles/ag_gen.dir/src/util/str_array.c.o -c \"/home/noah/Documents/School/Thesis Work/ag_parallel/src/util/str_array.c\"",
|
||||
"file": "/home/noah/Documents/School/Thesis Work/ag_parallel/src/util/str_array.c"
|
||||
"directory": "/home/nschrick/ag_parallel/build",
|
||||
"command": "/opt/apps/gcc/8.2.0/bin/gcc -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -I/usr/include/postgresql -I/home/nschrick/ag_parallel/src -isystem /home/nschrick/pkg/boost/1.77.0/include -isystem /storage/home/nschrick/pkg/openmpi/4.1.2/include -isystem /home/nschrick/pkg/openmpi/4.1.2/include -g -pthread -o CMakeFiles/ag_gen.dir/src/util/str_array.c.o -c /home/nschrick/ag_parallel/src/util/str_array.c",
|
||||
"file": "/home/nschrick/ag_parallel/src/util/str_array.c"
|
||||
},
|
||||
{
|
||||
"directory": "/home/noah/Documents/School/Thesis Work/ag_parallel/build",
|
||||
"command": "/usr/bin/cc -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -I/usr/include/postgresql -I\"/home/noah/Documents/School/Thesis Work/ag_parallel/src\" -g -pthread -o CMakeFiles/ag_gen.dir/src/util/vector.c.o -c \"/home/noah/Documents/School/Thesis Work/ag_parallel/src/util/vector.c\"",
|
||||
"file": "/home/noah/Documents/School/Thesis Work/ag_parallel/src/util/vector.c"
|
||||
"directory": "/home/nschrick/ag_parallel/build",
|
||||
"command": "/opt/apps/gcc/8.2.0/bin/gcc -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -I/usr/include/postgresql -I/home/nschrick/ag_parallel/src -isystem /home/nschrick/pkg/boost/1.77.0/include -isystem /storage/home/nschrick/pkg/openmpi/4.1.2/include -isystem /home/nschrick/pkg/openmpi/4.1.2/include -g -pthread -o CMakeFiles/ag_gen.dir/src/util/vector.c.o -c /home/nschrick/ag_parallel/src/util/vector.c",
|
||||
"file": "/home/nschrick/ag_parallel/src/util/vector.c"
|
||||
},
|
||||
{
|
||||
"directory": "/home/noah/Documents/School/Thesis Work/ag_parallel/build",
|
||||
"command": "/usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -I/usr/include/postgresql -I\"/home/noah/Documents/School/Thesis Work/ag_parallel/src\" -std=c++14 -fopenmp -DREDIS -g -g -O0 -ggdb -Wall -fopenmp -pedantic -pthread -o CMakeFiles/ag_gen.dir/src/mpi/serialize.cpp.o -c \"/home/noah/Documents/School/Thesis Work/ag_parallel/src/mpi/serialize.cpp\"",
|
||||
"file": "/home/noah/Documents/School/Thesis Work/ag_parallel/src/mpi/serialize.cpp"
|
||||
"directory": "/home/nschrick/ag_parallel/build",
|
||||
"command": "/opt/apps/gcc/8.2.0/bin/g++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -I/usr/include/postgresql -I/home/nschrick/ag_parallel/src -isystem /home/nschrick/pkg/boost/1.77.0/include -isystem /storage/home/nschrick/pkg/openmpi/4.1.2/include -isystem /home/nschrick/pkg/openmpi/4.1.2/include -std=c++14 -fopenmp -g -g -O0 -ggdb -Wall -fopenmp -pedantic -pthread -o CMakeFiles/ag_gen.dir/src/mpi/serialize.cpp.o -c /home/nschrick/ag_parallel/src/mpi/serialize.cpp",
|
||||
"file": "/home/nschrick/ag_parallel/src/mpi/serialize.cpp"
|
||||
},
|
||||
{
|
||||
"directory": "/home/noah/Documents/School/Thesis Work/ag_parallel/build",
|
||||
"command": "/usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -I/usr/include/postgresql -I\"/home/noah/Documents/School/Thesis Work/ag_parallel/src\" -std=c++14 -fopenmp -DREDIS -g -g -O0 -ggdb -Wall -fopenmp -pedantic -pthread -o CMakeFiles/ag_gen.dir/src/mpi/tasks.cpp.o -c \"/home/noah/Documents/School/Thesis Work/ag_parallel/src/mpi/tasks.cpp\"",
|
||||
"file": "/home/noah/Documents/School/Thesis Work/ag_parallel/src/mpi/tasks.cpp"
|
||||
},
|
||||
{
|
||||
"directory": "/home/noah/Documents/School/Thesis Work/ag_parallel/build",
|
||||
"command": "/usr/bin/cc -I/usr/include/postgresql -I\"/home/noah/Documents/School/Thesis Work/ag_parallel/src\" -g -o CMakeFiles/dynstr_test.dir/src/util/mem.c.o -c \"/home/noah/Documents/School/Thesis Work/ag_parallel/src/util/mem.c\"",
|
||||
"file": "/home/noah/Documents/School/Thesis Work/ag_parallel/src/util/mem.c"
|
||||
},
|
||||
{
|
||||
"directory": "/home/noah/Documents/School/Thesis Work/ag_parallel/build",
|
||||
"command": "/usr/bin/cc -I/usr/include/postgresql -I\"/home/noah/Documents/School/Thesis Work/ag_parallel/src\" -g -o CMakeFiles/dynstr_test.dir/src/tests/mem_test.c.o -c \"/home/noah/Documents/School/Thesis Work/ag_parallel/src/tests/mem_test.c\"",
|
||||
"file": "/home/noah/Documents/School/Thesis Work/ag_parallel/src/tests/mem_test.c"
|
||||
"directory": "/home/nschrick/ag_parallel/build",
|
||||
"command": "/opt/apps/gcc/8.2.0/bin/g++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -I/usr/include/postgresql -I/home/nschrick/ag_parallel/src -isystem /home/nschrick/pkg/boost/1.77.0/include -isystem /storage/home/nschrick/pkg/openmpi/4.1.2/include -isystem /home/nschrick/pkg/openmpi/4.1.2/include -std=c++14 -fopenmp -g -g -O0 -ggdb -Wall -fopenmp -pedantic -pthread -o CMakeFiles/ag_gen.dir/src/mpi/tasks.cpp.o -c /home/nschrick/ag_parallel/src/mpi/tasks.cpp",
|
||||
"file": "/home/nschrick/ag_parallel/src/mpi/tasks.cpp"
|
||||
}
|
||||
]
|
||||
@ -58,7 +58,7 @@ if [ "$TYPE" == "$strval1" ]; then
|
||||
|
||||
if [ "$(dnsdomainname)" = "hammer.esg.utulsa.edu" ]; then
|
||||
#4 Exploit Option
|
||||
mpiexec --mca btl_openib_allow_ib 1 --mca btl openib,self,vader --mca opal_warn_on_missing_libcuda 0 --bind-to numa --map-by numa -np "$NODES" --timeout 129600 ./ag_gen -n ../Oct_2021/nm_files/"$CARS"_car_timeline_maintenance.nm -x ../Oct_2021/Sync/4_Exploits/"$NUM_SERV"_Serv/sync_timeline_maintenance.xp -t "$NUM_THREADS" -q 1 -p -a 0.6 -z "$DBNAME" -l 40 -s
|
||||
mpiexec --mca btl_openib_allow_ib 1 --mca btl openib,self,vader --mca opal_warn_on_missing_libcuda 0 --bind-to numa --map-by numa -np "$NODES" --timeout 129600 ./ag_gen -n ../Oct_2021/nm_files/"$CARS"_car_timeline_maintenance.nm -x ../Oct_2021/Sync/4_Exploits/"$NUM_SERV"_Serv/sync_timeline_maintenance.xp -t "$NUM_THREADS" -q 1 -p -a 0.6 -z "$DBNAME" -l 200 -e -g DOTFILE.dot
|
||||
#6 Exploit Option
|
||||
#mpiexec --mca btl_openib_allow_ib 1 --mca btl openib,self,vader --mca opal_warn_on_missing_libcuda 0 --bind-to numa --map-by numa -np "$NODES" --timeout 129600 ./ag_gen -n ../Oct_2021/nm_files/"$CARS"_car_timeline_maintenance.nm -x ../Oct_2021/Sync/6_Exploits/"$NUM_SERV"_Serv/sync_timeline_maintenance.xp -t "$NUM_THREADS" -q 1 -p -a 0.6 -z "$DBNAME" -s -l 20
|
||||
else
|
||||
@ -81,8 +81,8 @@ fi
|
||||
|
||||
|
||||
#Graphviz Strict graphing to avoid duplicate nodes and edges
|
||||
#echo -n 'strict ' | cat - DOTFILE.dot > temp && mv temp DOTFILE.dot
|
||||
echo -n 'strict ' | cat - DOTFILE.dot > temp && mv temp DOTFILE.dot
|
||||
|
||||
#dot -Tsvg new.dot > ag.svg
|
||||
|
||||
#dot -Tsvg DOTFILE.dot > ag.svg
|
||||
dot -Tsvg DOTFILE.dot > ag.svg
|
||||
|
||||
10110
build/states.txt
10110
build/states.txt
File diff suppressed because it is too large
Load Diff
@ -309,6 +309,7 @@ double mem_threshold, mpi::communicator &world)
|
||||
{
|
||||
auto current_state = localFrontier.back();
|
||||
localFrontier.pop_back();
|
||||
std::cout << "Sending state ID " << current_state.get_id() << std::endl;
|
||||
for(int l=0; l < alloc; l++){
|
||||
mpi::request cs_req = world.isend(send_check(world, l), 20, current_state);
|
||||
cs_req.wait();
|
||||
@ -361,6 +362,7 @@ double mem_threshold, mpi::communicator &world)
|
||||
|
||||
//Have the 0th Task 2 node tell the other world nodes that it's done
|
||||
if(ttwo_comm.rank() == 0){
|
||||
//std::cout << "" << std::endl;
|
||||
for (int w = 0; w < world.size(); w++)
|
||||
{
|
||||
//2 Node Edge case
|
||||
@ -421,6 +423,13 @@ double mem_threshold, mpi::communicator &world)
|
||||
world.recv(mpi::any_source, 6, current_state);
|
||||
world.recv(mpi::any_source, 10, exploit);
|
||||
world.recv(mpi::any_source, 11, assetGroup);
|
||||
std::cout << "Received new state" << std::endl;
|
||||
if(instance.factbases.size() == 0){
|
||||
last_known_id = 0;
|
||||
}
|
||||
else last_known_id = instance.factbases.size()-1;
|
||||
if(get_num_states() > 1)
|
||||
last_known_id += get_num_states()-1;
|
||||
|
||||
struct timeval t31,t32;
|
||||
gettimeofday(&t31,NULL);
|
||||
@ -434,7 +443,7 @@ double mem_threshold, mpi::communicator &world)
|
||||
} //while probe/instance update ends
|
||||
} //else wait ends
|
||||
}
|
||||
|
||||
if(world.rank() == 0) std::cout << "" << std::endl;
|
||||
//Task Four
|
||||
if (world.rank() == send_check(world, alloc+two_alloc)){
|
||||
if(world.iprobe(0, 7) || world.iprobe(0, 8)){
|
||||
|
||||
@ -70,7 +70,7 @@ void task_one(AGGenInstance &instance, NetworkState ¤t_state,\
|
||||
int alloc, int two_alloc, int reduc_factor, int num_tasks, mpi::communicator &world,\
|
||||
mpi::communicator &tcomm){
|
||||
|
||||
//std::cout << "Process rank " << world.rank() << " with " << alloc << " node(s) allocated has started Task 1." << std::endl;
|
||||
//std::cout << "Process rank " << world.rank() << " with " << alloc << " node(s) allocated has started Task 1 and has a local communicator rank of " << tcomm.rank() << std::endl;
|
||||
std::vector<std::tuple<Exploit, AssetGroup>> appl_exploits;
|
||||
unsigned long esize = exploit_list.size();
|
||||
|
||||
@ -184,7 +184,7 @@ void task_one(AGGenInstance &instance, NetworkState ¤t_state,\
|
||||
if (alloc > two_alloc)
|
||||
skip_greatest = 1;
|
||||
if(world.rank() <= (alloc - skip_greatest)){
|
||||
//std::cout << "Process " << world.rank() << " sending applicable exploit list of size " << appl_exploits.size() <<\
|
||||
//std::cout << "Process " << world.rank() << " sending Appl exploit list of size " << appl_exploits.size() <<\
|
||||
" to Process " << send_check(world, world.rank() + alloc -1) << std::endl;
|
||||
mpi::request appl_req = world.isend(send_check(world, world.rank() + alloc -1), 30, appl_exploits);
|
||||
mpi::request cs_req = world.isend(send_check(world, world.rank() + alloc -1), 40, current_state);
|
||||
@ -206,7 +206,7 @@ void task_two(AGGenInstance &instance, int alloc, int two_alloc, boost::mpi::com
|
||||
world.recv(mpi::any_source, 30, appl_exploits);
|
||||
world.recv(mpi::any_source, 40, current_state);
|
||||
|
||||
//std::cout << "Process " << world.rank() << " received Task 1 data with Appl exploit size " << appl_exploits.size() << std::endl;
|
||||
std::cout << "Process " << world.rank() << " with local communicator rank " << ttwo_comm.rank() << " received Task 1 data with Appl exploit size " << appl_exploits.size() << " for State ID " << current_state.get_id() << std::endl;
|
||||
|
||||
//Check for new fact and new state that caused an update in the hash table and facts
|
||||
while(world.iprobe(mpi::any_source, 3) || world.iprobe(mpi::any_source, 4)){
|
||||
@ -275,7 +275,7 @@ void task_two(AGGenInstance &instance, int alloc, int two_alloc, boost::mpi::com
|
||||
sync_vectors[std::get<0>(sync_recv)].insert(std::end(sync_vectors[std::get<0>(sync_recv)]), std::begin(partial_appl_exploits), std::end(partial_appl_exploits));
|
||||
}
|
||||
}
|
||||
|
||||
std::cout << "Before the loop, Process " << world.rank() << " has Appl exploit size " << appl_exploits.size() << std::endl;
|
||||
//loop through the vector
|
||||
for(auto itr=appl_exploits.begin(); itr!=appl_exploits.end(); itr++){
|
||||
|
||||
@ -297,7 +297,7 @@ void task_two(AGGenInstance &instance, int alloc, int two_alloc, boost::mpi::com
|
||||
auto assetGroup = std::get<1>(e);
|
||||
|
||||
egroup=exploit.get_group();
|
||||
|
||||
std::cout << "Process " << world.rank() << " for state ID " << current_state.get_id() << " has exploit " << exploit.get_name() << " with group " << egroup << std::endl;
|
||||
if ((egroup != "null" && group_fired[egroup] == 0) || egroup == "null"){
|
||||
NetworkState new_state{current_state};
|
||||
std::vector<std::tuple<Exploit, AssetGroup>> sync_exploits;
|
||||
@ -311,10 +311,10 @@ void task_two(AGGenInstance &instance, int alloc, int two_alloc, boost::mpi::com
|
||||
//TODO: Does not work if only some assets belong to a group. This only works if
|
||||
//all assets are in the group
|
||||
if(sync_exploits.size() < instance.assets.size()){
|
||||
break;
|
||||
continue;
|
||||
}
|
||||
}
|
||||
//std::cout << "Sync exploit size " << sync_exploits.size() << " at Node " << world.rank() << " out of a total of " << appl_exploits.size() << std::endl;
|
||||
std::cout << "Sync exploit size " << sync_exploits.size() << " at Node " << world.rank() << " out of a total of " << appl_exploits.size() << std::endl;
|
||||
for(auto sync_itr=sync_exploits.begin(); sync_itr!=sync_exploits.end(); sync_itr++){
|
||||
e = *sync_itr;
|
||||
exploit = std::get<0>(e);
|
||||
@ -325,7 +325,8 @@ void task_two(AGGenInstance &instance, int alloc, int two_alloc, boost::mpi::com
|
||||
auto postconditions = createPostConditions(e, instance.facts);
|
||||
auto qualities = std::get<0>(postconditions);
|
||||
auto topologies = std::get<1>(postconditions);
|
||||
|
||||
|
||||
std::cout << "Exploit " << exploit.get_name() << " is applicable to ID " << current_state.get_id() << std::endl;
|
||||
for(auto &qual : qualities) {
|
||||
auto action = std::get<0>(qual);
|
||||
auto fact = std::get<1>(qual);
|
||||
@ -395,7 +396,7 @@ void task_two(AGGenInstance &instance, int alloc, int two_alloc, boost::mpi::com
|
||||
|
||||
//<6 Node Edge Case Prevention: Node 0 unable to execute task 3
|
||||
if(world.rank() != 0){
|
||||
//std::cout << "Node " << world.rank() << " sending new state data to Node 0" << std::endl;
|
||||
std::cout << "Node " << world.rank() << " sending new state data to Node 0" << std::endl;
|
||||
mpi::request ns_req = world.isend(0, 5, new_state);
|
||||
mpi::request cs_req = world.isend(0, 6, current_state);
|
||||
mpi::request ex_req = world.isend(0, 10, exploit);
|
||||
@ -420,7 +421,8 @@ void task_two(AGGenInstance &instance, int alloc, int two_alloc, boost::mpi::com
|
||||
}
|
||||
else{
|
||||
//std::cout << "Breaking." << std::endl;
|
||||
break;
|
||||
//break;
|
||||
continue;
|
||||
}
|
||||
}
|
||||
}
|
||||
@ -429,7 +431,7 @@ void task_three(AGGenInstance &instance, NetworkState &new_state, std::deque<Net
|
||||
double mem_threshold, boost::mpi::communicator &world, int alloc, int two_alloc, NetworkState ¤t_state,\
|
||||
Exploit &exploit, AssetGroup &assetGroup, std::unordered_map<size_t, int> &hash_map, int last_known_id){
|
||||
|
||||
std::cout << "Started Task 3." << std::endl;
|
||||
//std::cout << "Started Task 3." << std::endl;
|
||||
auto hash_num = new_state.get_hash(instance.facts);
|
||||
|
||||
//although local frontier is updated, the global hash is also updated to avoid testing on explored states.
|
||||
|
||||
Loading…
x
Reference in New Issue
Block a user