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Code Cleanup and Polishing

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This commit is contained in:
Noah L. Schrick 2022-02-11 05:32:19 -06:00
parent daf5d6bbbc
commit 1f72cfbfad
10 changed files with 14243 additions and 14405 deletions
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74
build/Makefile
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@ -48,19 +48,19 @@ cmake_force:
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@ -1,132 +1,142 @@
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"command": "/opt/apps/gcc/8.2.0/bin/g++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -I/usr/include/postgresql -I/home/nschrick/ag_parallel/src -isystem /home/nschrick/pkg/boost/1.77.0/include -isystem /storage/home/nschrick/pkg/openmpi/4.1.2/include -isystem /home/nschrick/pkg/openmpi/4.1.2/include -std=c++14 -fopenmp -g -g -O0 -ggdb -Wall -fopenmp -pedantic -pthread -o CMakeFiles/ag_gen.dir/src/mpi/tasks.cpp.o -c /home/nschrick/ag_parallel/src/mpi/tasks.cpp", "command": "/usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -I/usr/include/postgresql -I\"/home/noah/Documents/School/Thesis Work/ag_parallel/src\" -std=c++14 -fopenmp -DREDIS -g -g -O0 -ggdb -Wall -fopenmp -pedantic -pthread -o CMakeFiles/ag_gen.dir/src/mpi/tasks.cpp.o -c \"/home/noah/Documents/School/Thesis Work/ag_parallel/src/mpi/tasks.cpp\"",
"file": "/home/nschrick/ag_parallel/src/mpi/tasks.cpp" "file": "/home/noah/Documents/School/Thesis Work/ag_parallel/src/mpi/tasks.cpp"
},
{
"directory": "/home/noah/Documents/School/Thesis Work/ag_parallel/build",
"command": "/usr/bin/cc -I/usr/include/postgresql -I\"/home/noah/Documents/School/Thesis Work/ag_parallel/src\" -g -o CMakeFiles/dynstr_test.dir/src/util/mem.c.o -c \"/home/noah/Documents/School/Thesis Work/ag_parallel/src/util/mem.c\"",
"file": "/home/noah/Documents/School/Thesis Work/ag_parallel/src/util/mem.c"
},
{
"directory": "/home/noah/Documents/School/Thesis Work/ag_parallel/build",
"command": "/usr/bin/cc -I/usr/include/postgresql -I\"/home/noah/Documents/School/Thesis Work/ag_parallel/src\" -g -o CMakeFiles/dynstr_test.dir/src/tests/mem_test.c.o -c \"/home/noah/Documents/School/Thesis Work/ag_parallel/src/tests/mem_test.c\"",
"file": "/home/noah/Documents/School/Thesis Work/ag_parallel/src/tests/mem_test.c"
} }
] ]

2
build/run.sh
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@ -62,7 +62,7 @@ if [ "$TYPE" == "$strval1" ]; then
#6 Exploit Option #6 Exploit Option
#mpiexec --mca btl_openib_allow_ib 1 --mca btl openib,self,vader --mca opal_warn_on_missing_libcuda 0 --bind-to numa --map-by numa -np "$NODES" --timeout 129600 ./ag_gen -n ../Oct_2021/nm_files/"$CARS"_car_timeline_maintenance.nm -x ../Oct_2021/Sync/6_Exploits/"$NUM_SERV"_Serv/sync_timeline_maintenance.xp -t "$NUM_THREADS" -q 1 -p -a 0.6 -z "$DBNAME" -s -l 20 #mpiexec --mca btl_openib_allow_ib 1 --mca btl openib,self,vader --mca opal_warn_on_missing_libcuda 0 --bind-to numa --map-by numa -np "$NODES" --timeout 129600 ./ag_gen -n ../Oct_2021/nm_files/"$CARS"_car_timeline_maintenance.nm -x ../Oct_2021/Sync/6_Exploits/"$NUM_SERV"_Serv/sync_timeline_maintenance.xp -t "$NUM_THREADS" -q 1 -p -a 0.6 -z "$DBNAME" -s -l 20
else else
mpiexec --mca btl_openib_allow_ib 1 --mca opal_warn_on_missing_libcuda 0 --bind-to numa --map-by numa -np "$NODES" --timeout 129600 ./ag_gen -n ../Oct_2021/nm_files/"$CARS"_car_timeline_maintenance.nm -x ../Oct_2021/Sync/4_Exploits/"$NUM_SERV"_Serv/sync_timeline_maintenance.xp -t "$NUM_THREADS" -q 1 -p -s -l 20 -a 0.6 -g DOTFILE.dot -z "$DBNAME" mpiexec --mca btl_openib_allow_ib 1 --mca opal_warn_on_missing_libcuda 0 --bind-to numa --map-by numa -np "$NODES" --timeout 129600 ./ag_gen -n ../Oct_2021/nm_files/"$CARS"_car_timeline_maintenance.nm -x ../Oct_2021/Sync/4_Exploits/"$NUM_SERV"_Serv/sync_timeline_maintenance.xp -t "$NUM_THREADS" -q 1 -p -a 0.6 -g DOTFILE.dot -z "$DBNAME" -l 20 -e
fi fi
# 4 Exploit # 4 Exploit
#mpiexec -np "$NODES" --bind-to numa --map-by numa ./ag_gen -n ../Oct_2021/nm_files/"$CARS"_car_timeline_maintenance.nm -x ../Oct_2021/Sync/4_Exploits/"$NUM_SERV"_Serv/sync_timeline_maintenance.xp -t 1 -q 1 -p -a 0.6 -z "$DBNAME" #mpiexec -np "$NODES" --bind-to numa --map-by numa ./ag_gen -n ../Oct_2021/nm_files/"$CARS"_car_timeline_maintenance.nm -x ../Oct_2021/Sync/4_Exploits/"$NUM_SERV"_Serv/sync_timeline_maintenance.xp -t 1 -q 1 -p -a 0.6 -z "$DBNAME"

26318
build/states.txt
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File diff suppressed because it is too large Load Diff

2048
src/ag_gen/ag_gen.cpp
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File diff suppressed because it is too large Load Diff

4
src/ag_gen/ag_gen.h
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@ -91,10 +91,10 @@ class AGGen {
AGGenInstance &sg_generate(bool batch_process, int batch_num, int numThrd,\ AGGenInstance &sg_generate(bool batch_process, int batch_num, int numThrd,\
int initQSize, double mem_threshold, boost::mpi::communicator &world, int state_limit); int initQSize, double mem_threshold, boost::mpi::communicator &world, int state_limit);
AGGenInstance &generate(bool batch_process, int batch_num, int numThrd,\ AGGenInstance &tasking_generate(bool batch_process, int batch_num, int numThrd,\
int initQSize, double mem_threshold, boost::mpi::communicator &world); int initQSize, double mem_threshold, boost::mpi::communicator &world);
AGGenInstance &single_generate(bool batch_process, int batch_num, int numThrd,\ AGGenInstance &omp_generate(bool batch_process, int batch_num, int numThrd,\
int initQSize, double mem_threshold, boost::mpi::communicator &world); int initQSize, double mem_threshold, boost::mpi::communicator &world);
}; };

18
src/main.cpp
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@ -505,8 +505,8 @@ int main(int argc, char *argv[]) {
mpi_subgraphing = true; mpi_subgraphing = true;
break; break;
case 'e': case 'e':
mpi_tasking = true; mpi_tasking = true;
break; break;
case 'm': case 'm':
mpi_nodes = atoi(optarg); mpi_nodes = atoi(optarg);
break; break;
@ -527,6 +527,10 @@ int main(int argc, char *argv[]) {
} }
} }
if (mpi_subgraphing && mpi_tasking){
std::cout << " You have specified MPI Tasking and MPI Subgraphing. Please choose only 1 option." << std::endl;
exit(-1);
}
std::cout << "Arguments parsed." << std::endl; std::cout << "Arguments parsed." << std::endl;
mt::level mt_level = mt::multiple; mt::level mt_level = mt::multiple;
@ -690,12 +694,12 @@ int main(int argc, char *argv[]) {
std::cout << "Generating Attack Graph: " << std::flush; std::cout << "Generating Attack Graph: " << std::flush;
AGGen gen(_instance);//use AGGen class to instantiate an obj with the name gen! _instance obj as the parameter! constructor defined in ag_gen.cpp AGGen gen(_instance);//use AGGen class to instantiate an obj with the name gen! _instance obj as the parameter! constructor defined in ag_gen.cpp
if (mpi_subgraphing && world.size() > 3) if (mpi_subgraphing)
postinstance = gen.sg_generate(batch_process, batch_size, thread_count, init_qsize, alpha, world, depth_limit); //The method call to generate the attack graph, defined in ag_gen.cpp. postinstance = gen.sg_generate(batch_process, batch_size, thread_count, init_qsize, alpha, world, depth_limit); //The method call to generate the attack graph, defined in ag_gen.cpp.
else if (mpi_tasking && world.size() > 1) else if (mpi_tasking)
postinstance = gen.generate(batch_process, batch_size, thread_count, init_qsize, alpha, world); //The method call to generate the attack graph, defined in ag_gen.cpp. postinstance = gen.tasking_generate(batch_process, batch_size, thread_count, init_qsize, alpha, world); //The method call to generate the attack graph, defined in ag_gen.cpp.
else else
postinstance = gen.single_generate(batch_process, batch_size, thread_count, init_qsize, alpha, world); //The method call to generate the attack graph, defined in ag_gen.cpp. postinstance = gen.omp_generate(batch_process, batch_size, thread_count, init_qsize, alpha, world); //The method call to generate the attack graph, defined in ag_gen.cpp.
//world.barrier(); //world.barrier();
//Serialization Unit Testing on Postinstance Data //Serialization Unit Testing on Postinstance Data
@ -710,7 +714,7 @@ int main(int argc, char *argv[]) {
if(world.rank() == 0){ if(world.rank() == 0){
std::cout << "Saving to Database." << std::endl; std::cout << "Saving to Database." << std::endl;
save_ag_to_db(postinstance, true); save_ag_to_db(postinstance, true);
std::cout << "PostInstance states: " << postinstance.factbases.size() << std::endl; //std::cout << "PostInstance states: " << postinstance.factbases.size() << std::endl;
std::cout << "Total Edges: " << get_num_edges() << std::endl; std::cout << "Total Edges: " << get_num_edges() << std::endl;
std::cout << "Total Time: " << postinstance.elapsed_seconds.count() << " seconds\n"; std::cout << "Total Time: " << postinstance.elapsed_seconds.count() << " seconds\n";

16
src/mpi/tasks.cpp
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@ -401,8 +401,16 @@ void task_two(AGGenInstance &instance, int alloc, int two_alloc, boost::mpi::com
ag_req.wait(); ag_req.wait();
} }
else { else {
int last_known_id;
if(instance.factbases.size() == 0){
last_known_id = 0;
}
else last_known_id = instance.factbases.size()-1;
if(get_num_states() > 1)
last_known_id += get_num_states()-1;
//int last_known_id = instance.factbases.size()-1
task_three(instance, new_state, localFrontier, mem_threshold, world,\ task_three(instance, new_state, localFrontier, mem_threshold, world,\
alloc, two_alloc, current_state, exploit, assetGroup, hash_map); alloc, two_alloc, current_state, exploit, assetGroup, hash_map, last_known_id);
} }
} }
else{ else{
@ -414,14 +422,18 @@ void task_two(AGGenInstance &instance, int alloc, int two_alloc, boost::mpi::com
void task_three(AGGenInstance &instance, NetworkState &new_state, std::deque<NetworkState> &localFrontier,\ void task_three(AGGenInstance &instance, NetworkState &new_state, std::deque<NetworkState> &localFrontier,\
double mem_threshold, boost::mpi::communicator &world, int alloc, int two_alloc, NetworkState &current_state,\ double mem_threshold, boost::mpi::communicator &world, int alloc, int two_alloc, NetworkState &current_state,\
Exploit &exploit, AssetGroup &assetGroup, std::unordered_map<size_t, int> &hash_map){ Exploit &exploit, AssetGroup &assetGroup, std::unordered_map<size_t, int> &hash_map, int last_known_id){
//std::cout << "Started Task 3." << std::endl; //std::cout << "Started Task 3." << std::endl;
auto hash_num = new_state.get_hash(instance.facts); auto hash_num = new_state.get_hash(instance.facts);
//although local frontier is updated, the global hash is also updated to avoid testing on explored states. //although local frontier is updated, the global hash is also updated to avoid testing on explored states.
if (hash_map.find(hash_num) == hash_map.end()) { if (hash_map.find(hash_num) == hash_map.end()) {
new_state.reset_curr_id(last_known_id+1);
new_state.set_id(); new_state.set_id();
auto new_id = new_state.get_id();
last_known_id = new_id;
auto facts_tuple = new_state.get_factbase().get_facts_tuple(); auto facts_tuple = new_state.get_factbase().get_facts_tuple();
//FactbaseItems new_items = std::make_tuple(facts_tuple, new_state.get_id()); //FactbaseItems new_items = std::make_tuple(facts_tuple, new_state.get_id());
//instance.factbase_items.push_back(new_items); //instance.factbase_items.push_back(new_items);

2
src/mpi/tasks.h
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@ -17,7 +17,7 @@ void task_two(AGGenInstance &instance, int alloc, int two_alloc, boost::mpi::com
void task_three(AGGenInstance &instance, NetworkState &new_state, std::deque<NetworkState> &localFrontier,\ void task_three(AGGenInstance &instance, NetworkState &new_state, std::deque<NetworkState> &localFrontier,\
double mem_threshold, boost::mpi::communicator &world, int alloc, int two_alloc, NetworkState &current_state,\ double mem_threshold, boost::mpi::communicator &world, int alloc, int two_alloc, NetworkState &current_state,\
Exploit &exploit, AssetGroup &assetGroup, std::unordered_map<size_t, int> &hash_map); Exploit &exploit, AssetGroup &assetGroup, std::unordered_map<size_t, int> &hash_map, int last_known_id);
void task_four(NetworkState &new_state); void task_four(NetworkState &new_state);