forked from UTulsa-Research/ag_gen
Various bug fixes
This commit is contained in:
parent
ad44f5b6f2
commit
124a3ef5f4
@ -48,19 +48,19 @@ cmake_force:
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SHELL = /bin/sh
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# The CMake executable.
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CMAKE_COMMAND = /usr/bin/cmake
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CMAKE_COMMAND = /storage/home/nschrick/pkg/cmake/3.22.0/bin/cmake
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# The command to remove a file.
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RM = /usr/bin/cmake -E rm -f
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RM = /storage/home/nschrick/pkg/cmake/3.22.0/bin/cmake -E rm -f
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# Escaping for special characters.
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EQUALS = =
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# The top-level source directory on which CMake was run.
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CMAKE_SOURCE_DIR = "/home/noah/Documents/School/Thesis Work/ag_parallel"
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CMAKE_SOURCE_DIR = /home/nschrick/ag_parallel
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# The top-level build directory on which CMake was run.
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CMAKE_BINARY_DIR = "/home/noah/Documents/School/Thesis Work/ag_parallel/build"
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CMAKE_BINARY_DIR = /home/nschrick/ag_parallel/build
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#=============================================================================
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# Targets provided globally by CMake.
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@ -68,7 +68,7 @@ CMAKE_BINARY_DIR = "/home/noah/Documents/School/Thesis Work/ag_parallel/build"
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# Special rule for the target edit_cache
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edit_cache:
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@$(CMAKE_COMMAND) -E cmake_echo_color --switch=$(COLOR) --cyan "Running CMake cache editor..."
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/usr/bin/ccmake -S$(CMAKE_SOURCE_DIR) -B$(CMAKE_BINARY_DIR)
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/storage/home/nschrick/pkg/cmake/3.22.0/bin/ccmake -S$(CMAKE_SOURCE_DIR) -B$(CMAKE_BINARY_DIR)
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.PHONY : edit_cache
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# Special rule for the target edit_cache
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@ -78,7 +78,7 @@ edit_cache/fast: edit_cache
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# Special rule for the target rebuild_cache
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rebuild_cache:
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@$(CMAKE_COMMAND) -E cmake_echo_color --switch=$(COLOR) --cyan "Running CMake to regenerate build system..."
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/usr/bin/cmake --regenerate-during-build -S$(CMAKE_SOURCE_DIR) -B$(CMAKE_BINARY_DIR)
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/storage/home/nschrick/pkg/cmake/3.22.0/bin/cmake --regenerate-during-build -S$(CMAKE_SOURCE_DIR) -B$(CMAKE_BINARY_DIR)
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.PHONY : rebuild_cache
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# Special rule for the target rebuild_cache
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@ -87,9 +87,9 @@ rebuild_cache/fast: rebuild_cache
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# The main all target
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all: cmake_check_build_system
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$(CMAKE_COMMAND) -E cmake_progress_start "/home/noah/Documents/School/Thesis Work/ag_parallel/build/CMakeFiles" "/home/noah/Documents/School/Thesis Work/ag_parallel/build//CMakeFiles/progress.marks"
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$(CMAKE_COMMAND) -E cmake_progress_start /home/nschrick/ag_parallel/build/CMakeFiles /home/nschrick/ag_parallel/build//CMakeFiles/progress.marks
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$(MAKE) $(MAKESILENT) -f CMakeFiles/Makefile2 all
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$(CMAKE_COMMAND) -E cmake_progress_start "/home/noah/Documents/School/Thesis Work/ag_parallel/build/CMakeFiles" 0
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$(CMAKE_COMMAND) -E cmake_progress_start /home/nschrick/ag_parallel/build/CMakeFiles 0
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.PHONY : all
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# The main clean target
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@ -116,19 +116,6 @@ depend:
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$(CMAKE_COMMAND) -S$(CMAKE_SOURCE_DIR) -B$(CMAKE_BINARY_DIR) --check-build-system CMakeFiles/Makefile.cmake 1
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.PHONY : depend
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#=============================================================================
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# Target rules for targets named doc
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# Build rule for target.
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doc: cmake_check_build_system
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$(MAKE) $(MAKESILENT) -f CMakeFiles/Makefile2 doc
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.PHONY : doc
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.PHONY : doc/fast
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#=============================================================================
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# Target rules for targets named ag_gen
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@ -142,19 +129,6 @@ ag_gen/fast:
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$(MAKE) $(MAKESILENT) -f CMakeFiles/ag_gen.dir/build.make CMakeFiles/ag_gen.dir/build
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.PHONY : ag_gen/fast
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#=============================================================================
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# Target rules for targets named dynstr_test
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# Build rule for target.
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dynstr_test: cmake_check_build_system
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$(MAKE) $(MAKESILENT) -f CMakeFiles/Makefile2 dynstr_test
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.PHONY : dynstr_test
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# fast build rule for target.
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dynstr_test/fast:
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$(MAKE) $(MAKESILENT) -f CMakeFiles/dynstr_test.dir/build.make CMakeFiles/dynstr_test.dir/build
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.PHONY : dynstr_test/fast
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nm_parser.o: nm_parser.c.o
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.PHONY : nm_parser.o
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@ -491,30 +465,6 @@ src/mpi/tasks.cpp.s:
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$(MAKE) $(MAKESILENT) -f CMakeFiles/ag_gen.dir/build.make CMakeFiles/ag_gen.dir/src/mpi/tasks.cpp.s
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.PHONY : src/mpi/tasks.cpp.s
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src/tests/mem_test.o: src/tests/mem_test.c.o
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.PHONY : src/tests/mem_test.o
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# target to build an object file
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.PHONY : src/tests/mem_test.c.o
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src/tests/mem_test.i: src/tests/mem_test.c.i
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.PHONY : src/tests/mem_test.i
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# target to preprocess a source file
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src/tests/mem_test.c.i:
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$(MAKE) $(MAKESILENT) -f CMakeFiles/dynstr_test.dir/build.make CMakeFiles/dynstr_test.dir/src/tests/mem_test.c.i
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.PHONY : src/tests/mem_test.c.i
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src/tests/mem_test.s: src/tests/mem_test.c.s
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.PHONY : src/tests/mem_test.s
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# target to generate assembly for a file
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.PHONY : src/tests/mem_test.c.s
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src/util/avail_mem.o: src/util/avail_mem.cpp.o
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.PHONY : src/util/avail_mem.o
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@ -665,7 +615,6 @@ src/util/mem.o: src/util/mem.c.o
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# target to build an object file
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src/util/mem.c.o:
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$(MAKE) $(MAKESILENT) -f CMakeFiles/ag_gen.dir/build.make CMakeFiles/ag_gen.dir/src/util/mem.c.o
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.PHONY : src/util/mem.c.o
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src/util/mem.i: src/util/mem.c.i
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@ -674,7 +623,6 @@ src/util/mem.i: src/util/mem.c.i
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# target to preprocess a source file
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src/util/mem.c.i:
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.PHONY : src/util/mem.c.i
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src/util/mem.s: src/util/mem.c.s
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@ -683,7 +631,6 @@ src/util/mem.s: src/util/mem.c.s
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# target to generate assembly for a file
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src/util/mem.c.s:
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.PHONY : src/util/mem.c.s
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src/util/redis_manager.o: src/util/redis_manager.cpp.o
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@ -814,9 +761,7 @@ help:
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@echo "... depend"
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@echo "... edit_cache"
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@echo "... rebuild_cache"
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@echo "... doc"
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@echo "... ag_gen"
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@echo "... dynstr_test"
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@echo "... nm_parser.o"
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@echo "... nm_parser.i"
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@echo "... nm_parser.s"
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@ -859,9 +804,6 @@ help:
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@echo "... src/mpi/tasks.o"
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@echo "... src/mpi/tasks.i"
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@echo "... src/mpi/tasks.s"
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@echo "... src/tests/mem_test.o"
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@echo "... src/tests/mem_test.i"
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@echo "... src/tests/mem_test.s"
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@echo "... src/util/avail_mem.o"
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@echo "... src/util/avail_mem.i"
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@echo "... src/util/avail_mem.s"
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BIN
build/ag_gen
BIN
build/ag_gen
Binary file not shown.
@ -3,9 +3,9 @@
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#SBATCH --job-name=ag_parallel_ser
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#SBATCH --error=./slurm_reports/job.%J.err
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#SBATCH --output=./slurm_reports/job.%J.out
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#SBATCH --nodes=4
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#SBATCH --nodes=10
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#SBATCH --mem=0
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#SBATCH --exclude=compute02,compute10
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#SBATCH --exclude=compute02,compute09
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#SBATCH --export=ALL
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export LD_LIBRARY_PATH=/home/nschrick/pkg/postgresql/13.4/lib
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@ -15,7 +15,7 @@ NUM_SERV=${1:-1}
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TYPE=${2:-sync}
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CARS=${3:-2}
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DBNAME=${4:-tmp}
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NODES=${5:-3}
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NODES=${5:-6}
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module load graphviz
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module load gcc
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@ -1,142 +1,132 @@
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[
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"command": "/opt/apps/gcc/8.2.0/bin/g++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -I/usr/include/postgresql -I/home/nschrick/ag_parallel/src -isystem /home/nschrick/pkg/boost/1.77.0/include -isystem /storage/home/nschrick/pkg/openmpi/4.1.2/include -isystem /home/nschrick/pkg/openmpi/4.1.2/include -std=c++14 -fopenmp -g -g -O0 -ggdb -Wall -fopenmp -pedantic -pthread -o CMakeFiles/ag_gen.dir/src/util/redis_manager.cpp.o -c /home/nschrick/ag_parallel/src/util/redis_manager.cpp",
|
||||
"file": "/home/nschrick/ag_parallel/src/util/redis_manager.cpp"
|
||||
},
|
||||
{
|
||||
"directory": "/home/noah/Documents/School/Thesis Work/ag_parallel/build",
|
||||
"command": "/usr/bin/cc -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -I/usr/include/postgresql -I\"/home/noah/Documents/School/Thesis Work/ag_parallel/src\" -g -pthread -o CMakeFiles/ag_gen.dir/src/util/str_array.c.o -c \"/home/noah/Documents/School/Thesis Work/ag_parallel/src/util/str_array.c\"",
|
||||
"file": "/home/noah/Documents/School/Thesis Work/ag_parallel/src/util/str_array.c"
|
||||
"directory": "/home/nschrick/ag_parallel/build",
|
||||
"command": "/opt/apps/gcc/8.2.0/bin/gcc -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -I/usr/include/postgresql -I/home/nschrick/ag_parallel/src -isystem /home/nschrick/pkg/boost/1.77.0/include -isystem /storage/home/nschrick/pkg/openmpi/4.1.2/include -isystem /home/nschrick/pkg/openmpi/4.1.2/include -g -pthread -o CMakeFiles/ag_gen.dir/src/util/str_array.c.o -c /home/nschrick/ag_parallel/src/util/str_array.c",
|
||||
"file": "/home/nschrick/ag_parallel/src/util/str_array.c"
|
||||
},
|
||||
{
|
||||
"directory": "/home/noah/Documents/School/Thesis Work/ag_parallel/build",
|
||||
"command": "/usr/bin/cc -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -I/usr/include/postgresql -I\"/home/noah/Documents/School/Thesis Work/ag_parallel/src\" -g -pthread -o CMakeFiles/ag_gen.dir/src/util/vector.c.o -c \"/home/noah/Documents/School/Thesis Work/ag_parallel/src/util/vector.c\"",
|
||||
"file": "/home/noah/Documents/School/Thesis Work/ag_parallel/src/util/vector.c"
|
||||
"directory": "/home/nschrick/ag_parallel/build",
|
||||
"command": "/opt/apps/gcc/8.2.0/bin/gcc -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -I/usr/include/postgresql -I/home/nschrick/ag_parallel/src -isystem /home/nschrick/pkg/boost/1.77.0/include -isystem /storage/home/nschrick/pkg/openmpi/4.1.2/include -isystem /home/nschrick/pkg/openmpi/4.1.2/include -g -pthread -o CMakeFiles/ag_gen.dir/src/util/vector.c.o -c /home/nschrick/ag_parallel/src/util/vector.c",
|
||||
"file": "/home/nschrick/ag_parallel/src/util/vector.c"
|
||||
},
|
||||
{
|
||||
"directory": "/home/noah/Documents/School/Thesis Work/ag_parallel/build",
|
||||
"command": "/usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -I/usr/include/postgresql -I\"/home/noah/Documents/School/Thesis Work/ag_parallel/src\" -std=c++14 -fopenmp -DREDIS -g -g -O0 -ggdb -Wall -fopenmp -pedantic -pthread -o CMakeFiles/ag_gen.dir/src/mpi/serialize.cpp.o -c \"/home/noah/Documents/School/Thesis Work/ag_parallel/src/mpi/serialize.cpp\"",
|
||||
"file": "/home/noah/Documents/School/Thesis Work/ag_parallel/src/mpi/serialize.cpp"
|
||||
"directory": "/home/nschrick/ag_parallel/build",
|
||||
"command": "/opt/apps/gcc/8.2.0/bin/g++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -I/usr/include/postgresql -I/home/nschrick/ag_parallel/src -isystem /home/nschrick/pkg/boost/1.77.0/include -isystem /storage/home/nschrick/pkg/openmpi/4.1.2/include -isystem /home/nschrick/pkg/openmpi/4.1.2/include -std=c++14 -fopenmp -g -g -O0 -ggdb -Wall -fopenmp -pedantic -pthread -o CMakeFiles/ag_gen.dir/src/mpi/serialize.cpp.o -c /home/nschrick/ag_parallel/src/mpi/serialize.cpp",
|
||||
"file": "/home/nschrick/ag_parallel/src/mpi/serialize.cpp"
|
||||
},
|
||||
{
|
||||
"directory": "/home/noah/Documents/School/Thesis Work/ag_parallel/build",
|
||||
"command": "/usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -I/usr/include/postgresql -I\"/home/noah/Documents/School/Thesis Work/ag_parallel/src\" -std=c++14 -fopenmp -DREDIS -g -g -O0 -ggdb -Wall -fopenmp -pedantic -pthread -o CMakeFiles/ag_gen.dir/src/mpi/tasks.cpp.o -c \"/home/noah/Documents/School/Thesis Work/ag_parallel/src/mpi/tasks.cpp\"",
|
||||
"file": "/home/noah/Documents/School/Thesis Work/ag_parallel/src/mpi/tasks.cpp"
|
||||
},
|
||||
{
|
||||
"directory": "/home/noah/Documents/School/Thesis Work/ag_parallel/build",
|
||||
"command": "/usr/bin/cc -I/usr/include/postgresql -I\"/home/noah/Documents/School/Thesis Work/ag_parallel/src\" -g -o CMakeFiles/dynstr_test.dir/src/util/mem.c.o -c \"/home/noah/Documents/School/Thesis Work/ag_parallel/src/util/mem.c\"",
|
||||
"file": "/home/noah/Documents/School/Thesis Work/ag_parallel/src/util/mem.c"
|
||||
},
|
||||
{
|
||||
"directory": "/home/noah/Documents/School/Thesis Work/ag_parallel/build",
|
||||
"command": "/usr/bin/cc -I/usr/include/postgresql -I\"/home/noah/Documents/School/Thesis Work/ag_parallel/src\" -g -o CMakeFiles/dynstr_test.dir/src/tests/mem_test.c.o -c \"/home/noah/Documents/School/Thesis Work/ag_parallel/src/tests/mem_test.c\"",
|
||||
"file": "/home/noah/Documents/School/Thesis Work/ag_parallel/src/tests/mem_test.c"
|
||||
"directory": "/home/nschrick/ag_parallel/build",
|
||||
"command": "/opt/apps/gcc/8.2.0/bin/g++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -I/usr/include/postgresql -I/home/nschrick/ag_parallel/src -isystem /home/nschrick/pkg/boost/1.77.0/include -isystem /storage/home/nschrick/pkg/openmpi/4.1.2/include -isystem /home/nschrick/pkg/openmpi/4.1.2/include -std=c++14 -fopenmp -g -g -O0 -ggdb -Wall -fopenmp -pedantic -pthread -o CMakeFiles/ag_gen.dir/src/mpi/tasks.cpp.o -c /home/nschrick/ag_parallel/src/mpi/tasks.cpp",
|
||||
"file": "/home/nschrick/ag_parallel/src/mpi/tasks.cpp"
|
||||
}
|
||||
]
|
||||
@ -369,10 +369,11 @@ AGGenInstance &AGGen::generate(bool batch_process, int batch_size, int numThrd,
|
||||
|
||||
//Task 1 Node Allocating
|
||||
int alloc;
|
||||
double ceil_val;
|
||||
if(world.size() <= num_tasks)
|
||||
alloc = 1;
|
||||
else{
|
||||
double ceil_val = (world.size()-num_tasks)/2;
|
||||
ceil_val = ((double)world.size()-(double)num_tasks)/2.0;
|
||||
alloc = 1 + ceil(ceil_val);
|
||||
}
|
||||
|
||||
@ -380,9 +381,10 @@ AGGenInstance &AGGen::generate(bool batch_process, int batch_size, int numThrd,
|
||||
int reduc_factor = 0;
|
||||
int two_alloc = alloc;
|
||||
if(world.size() % 2 != 0 && world.size() > num_tasks){
|
||||
int two_alloc = alloc-1;
|
||||
two_alloc = alloc-1;
|
||||
reduc_factor = 1;
|
||||
}
|
||||
std::cout << "World Size: " << world.size() << " Allocated to Task 1: " << alloc << " Allocated to Task 2: " << two_alloc << "Ceil val: " << ceil_val << std::endl;
|
||||
|
||||
//Create Communicators
|
||||
boost::mpi::communicator tcomm = world.split(world.rank() > 0 && world.rank() <= alloc);
|
||||
@ -519,7 +521,7 @@ AGGenInstance &AGGen::generate(bool batch_process, int batch_size, int numThrd,
|
||||
std::cout << "Node " << world.rank() << " is waiting for Task 2 completion." << std::endl;
|
||||
int finished_signal = 0;
|
||||
if(world.iprobe(send_check(world, alloc), 2) || world.iprobe(0, 2)){
|
||||
world.recv(mpi::any_source, finished_signal);
|
||||
world.recv(mpi::any_source, 2, finished_signal);
|
||||
}
|
||||
|
||||
//while(!world.iprobe(send_check(world, alloc), 2) || world.iprobe(mpi::any_source, 3) || world.iprobe(mpi::any_source, 4) || world.iprobe(mpi::any_source, 5))
|
||||
@ -527,10 +529,13 @@ AGGenInstance &AGGen::generate(bool batch_process, int batch_size, int numThrd,
|
||||
{
|
||||
//Check for the finished signal
|
||||
if(world.iprobe(send_check(world, alloc), 2) || world.iprobe(0, 2)){
|
||||
std::cout << "Else nodes received task 2 completion message." << std::endl;
|
||||
world.recv(mpi::any_source, 2, finished_signal);
|
||||
std::cout << "Receive message complete." << std::endl;
|
||||
}
|
||||
//Prevent double-pulling
|
||||
if(!finished_signal){
|
||||
std::cout << "Else nodes received task 2 completion message." << std::endl;
|
||||
world.recv(mpi::any_source, 2, finished_signal);
|
||||
std::cout << "Receive message complete." << std::endl;
|
||||
}
|
||||
}
|
||||
|
||||
//If we get a new fact and new state, update
|
||||
if(world.iprobe(mpi::any_source, 3) && world.iprobe(mpi::any_source, 4)){
|
||||
|
||||
@ -167,13 +167,25 @@ void task_two(AGGenInstance &instance, int alloc, int two_alloc, boost::mpi::com
|
||||
NetworkState current_state;
|
||||
std::vector<std::tuple<Exploit, AssetGroup>> appl_exploits;
|
||||
|
||||
if(ttwo_comm.rank() == 0)
|
||||
world.recv(mpi::any_source, 30, appl_exploits);
|
||||
world.recv(mpi::any_source, 30, appl_exploits);
|
||||
world.recv(mpi::any_source, 40, current_state);
|
||||
|
||||
std::cout << "Process " << world.rank() << " received Task 1 data." << std::endl;
|
||||
std::cout << "Appl exploit size " << appl_exploits.size() << std::endl;
|
||||
|
||||
//Check for new fact and new state that caused an update in the hash table and facts
|
||||
while(world.iprobe(mpi::any_source, 3) || world.iprobe(mpi::any_source, 4)){
|
||||
NetworkState update_state;
|
||||
Quality update_fact;
|
||||
|
||||
world.recv(mpi::any_source, 3, update_state);
|
||||
world.recv(mpi::any_source, 4, update_fact);
|
||||
|
||||
instance.facts.hash_table[update_state.compound_assign(update_fact)]=instance.facts.size();
|
||||
instance.facts.length++;
|
||||
instance.facts.str_vector.push_back(update_state.compound_assign(update_fact));
|
||||
}
|
||||
|
||||
std::vector<std::tuple<Exploit, AssetGroup>> partial_appl_exploits;
|
||||
|
||||
//Don't think we need this? All nodes get their own appl_expl list
|
||||
@ -221,9 +233,10 @@ void task_two(AGGenInstance &instance, int alloc, int two_alloc, boost::mpi::com
|
||||
}
|
||||
|
||||
if(ttwo_comm.rank() == 0 && ttwo_comm.size() > 1){
|
||||
for(auto itr = appl_exploits.begin(); itr != appl_exploits.end();){
|
||||
itr = appl_exploits.erase(itr);
|
||||
}
|
||||
//Attempt to distribute workload evenly has unintended effects since we don't know which Task 1 data goes where: it could all go to this node.
|
||||
//for(auto itr = appl_exploits.begin(); itr != appl_exploits.end();){
|
||||
// itr = appl_exploits.erase(itr);
|
||||
//}
|
||||
for (int r = 0; r < ex_groups.size() * (ttwo_comm.size()-1); r++){
|
||||
ttwo_comm.irecv(mpi::any_source, 6, partial_appl_exploits);
|
||||
for(auto itr=partial_appl_exploits.begin(); itr!=partial_appl_exploits.end(); itr++){
|
||||
@ -234,6 +247,18 @@ void task_two(AGGenInstance &instance, int alloc, int two_alloc, boost::mpi::com
|
||||
}
|
||||
//loop through the vector
|
||||
for(auto itr=appl_exploits.begin(); itr!=appl_exploits.end(); itr++){
|
||||
|
||||
//Check for new fact and new state that caused an update in the hash table and facts
|
||||
while(world.iprobe(mpi::any_source, 3) || world.iprobe(mpi::any_source, 4)){
|
||||
NetworkState update_state;
|
||||
Quality update_fact;
|
||||
|
||||
world.recv(mpi::any_source, 3, update_state);
|
||||
world.recv(mpi::any_source, 4, update_fact);
|
||||
instance.facts.hash_table[update_state.compound_assign(update_fact)]=instance.facts.size();
|
||||
instance.facts.length++;
|
||||
instance.facts.str_vector.push_back(update_state.compound_assign(update_fact));
|
||||
}
|
||||
|
||||
auto e = *itr;
|
||||
auto exploit = std::get<0>(e);
|
||||
@ -442,4 +467,4 @@ int send_check(boost::mpi::communicator &world, int curr_node){
|
||||
send_to = 0;
|
||||
|
||||
return send_to;
|
||||
}
|
||||
}
|
||||
|
||||
Loading…
x
Reference in New Issue
Block a user