Various bug fixes

This commit is contained in:
hammer 2022-01-31 00:20:15 -06:00
parent ad44f5b6f2
commit 124a3ef5f4
6 changed files with 132 additions and 170 deletions

View File

@ -48,19 +48,19 @@ cmake_force:
SHELL = /bin/sh
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CMAKE_COMMAND = /usr/bin/cmake
CMAKE_COMMAND = /storage/home/nschrick/pkg/cmake/3.22.0/bin/cmake
# The command to remove a file.
RM = /usr/bin/cmake -E rm -f
RM = /storage/home/nschrick/pkg/cmake/3.22.0/bin/cmake -E rm -f
# Escaping for special characters.
EQUALS = =
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CMAKE_SOURCE_DIR = "/home/noah/Documents/School/Thesis Work/ag_parallel"
CMAKE_SOURCE_DIR = /home/nschrick/ag_parallel
# The top-level build directory on which CMake was run.
CMAKE_BINARY_DIR = "/home/noah/Documents/School/Thesis Work/ag_parallel/build"
CMAKE_BINARY_DIR = /home/nschrick/ag_parallel/build
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@ -68,7 +68,7 @@ CMAKE_BINARY_DIR = "/home/noah/Documents/School/Thesis Work/ag_parallel/build"
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@ -78,7 +78,7 @@ edit_cache/fast: edit_cache
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@ -87,9 +87,9 @@ rebuild_cache/fast: rebuild_cache
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@ -665,7 +615,6 @@ src/util/mem.o: src/util/mem.c.o
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@ -814,9 +761,7 @@ help:
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@echo "... edit_cache"
@echo "... rebuild_cache"
@echo "... doc"
@echo "... ag_gen"
@echo "... dynstr_test"
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@echo "... nm_parser.s"
@ -859,9 +804,6 @@ help:
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@echo "... src/mpi/tasks.i"
@echo "... src/mpi/tasks.s"
@echo "... src/tests/mem_test.o"
@echo "... src/tests/mem_test.i"
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@echo "... src/util/avail_mem.s"

Binary file not shown.

View File

@ -3,9 +3,9 @@
#SBATCH --job-name=ag_parallel_ser
#SBATCH --error=./slurm_reports/job.%J.err
#SBATCH --output=./slurm_reports/job.%J.out
#SBATCH --nodes=4
#SBATCH --nodes=10
#SBATCH --mem=0
#SBATCH --exclude=compute02,compute10
#SBATCH --exclude=compute02,compute09
#SBATCH --export=ALL
export LD_LIBRARY_PATH=/home/nschrick/pkg/postgresql/13.4/lib
@ -15,7 +15,7 @@ NUM_SERV=${1:-1}
TYPE=${2:-sync}
CARS=${3:-2}
DBNAME=${4:-tmp}
NODES=${5:-3}
NODES=${5:-6}
module load graphviz
module load gcc

View File

@ -1,142 +1,132 @@
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View File

@ -369,10 +369,11 @@ AGGenInstance &AGGen::generate(bool batch_process, int batch_size, int numThrd,
//Task 1 Node Allocating
int alloc;
double ceil_val;
if(world.size() <= num_tasks)
alloc = 1;
else{
double ceil_val = (world.size()-num_tasks)/2;
ceil_val = ((double)world.size()-(double)num_tasks)/2.0;
alloc = 1 + ceil(ceil_val);
}
@ -380,9 +381,10 @@ AGGenInstance &AGGen::generate(bool batch_process, int batch_size, int numThrd,
int reduc_factor = 0;
int two_alloc = alloc;
if(world.size() % 2 != 0 && world.size() > num_tasks){
int two_alloc = alloc-1;
two_alloc = alloc-1;
reduc_factor = 1;
}
std::cout << "World Size: " << world.size() << " Allocated to Task 1: " << alloc << " Allocated to Task 2: " << two_alloc << "Ceil val: " << ceil_val << std::endl;
//Create Communicators
boost::mpi::communicator tcomm = world.split(world.rank() > 0 && world.rank() <= alloc);
@ -519,7 +521,7 @@ AGGenInstance &AGGen::generate(bool batch_process, int batch_size, int numThrd,
std::cout << "Node " << world.rank() << " is waiting for Task 2 completion." << std::endl;
int finished_signal = 0;
if(world.iprobe(send_check(world, alloc), 2) || world.iprobe(0, 2)){
world.recv(mpi::any_source, finished_signal);
world.recv(mpi::any_source, 2, finished_signal);
}
//while(!world.iprobe(send_check(world, alloc), 2) || world.iprobe(mpi::any_source, 3) || world.iprobe(mpi::any_source, 4) || world.iprobe(mpi::any_source, 5))
@ -527,10 +529,13 @@ AGGenInstance &AGGen::generate(bool batch_process, int batch_size, int numThrd,
{
//Check for the finished signal
if(world.iprobe(send_check(world, alloc), 2) || world.iprobe(0, 2)){
std::cout << "Else nodes received task 2 completion message." << std::endl;
world.recv(mpi::any_source, 2, finished_signal);
std::cout << "Receive message complete." << std::endl;
}
//Prevent double-pulling
if(!finished_signal){
std::cout << "Else nodes received task 2 completion message." << std::endl;
world.recv(mpi::any_source, 2, finished_signal);
std::cout << "Receive message complete." << std::endl;
}
}
//If we get a new fact and new state, update
if(world.iprobe(mpi::any_source, 3) && world.iprobe(mpi::any_source, 4)){

View File

@ -167,13 +167,25 @@ void task_two(AGGenInstance &instance, int alloc, int two_alloc, boost::mpi::com
NetworkState current_state;
std::vector<std::tuple<Exploit, AssetGroup>> appl_exploits;
if(ttwo_comm.rank() == 0)
world.recv(mpi::any_source, 30, appl_exploits);
world.recv(mpi::any_source, 30, appl_exploits);
world.recv(mpi::any_source, 40, current_state);
std::cout << "Process " << world.rank() << " received Task 1 data." << std::endl;
std::cout << "Appl exploit size " << appl_exploits.size() << std::endl;
//Check for new fact and new state that caused an update in the hash table and facts
while(world.iprobe(mpi::any_source, 3) || world.iprobe(mpi::any_source, 4)){
NetworkState update_state;
Quality update_fact;
world.recv(mpi::any_source, 3, update_state);
world.recv(mpi::any_source, 4, update_fact);
instance.facts.hash_table[update_state.compound_assign(update_fact)]=instance.facts.size();
instance.facts.length++;
instance.facts.str_vector.push_back(update_state.compound_assign(update_fact));
}
std::vector<std::tuple<Exploit, AssetGroup>> partial_appl_exploits;
//Don't think we need this? All nodes get their own appl_expl list
@ -221,9 +233,10 @@ void task_two(AGGenInstance &instance, int alloc, int two_alloc, boost::mpi::com
}
if(ttwo_comm.rank() == 0 && ttwo_comm.size() > 1){
for(auto itr = appl_exploits.begin(); itr != appl_exploits.end();){
itr = appl_exploits.erase(itr);
}
//Attempt to distribute workload evenly has unintended effects since we don't know which Task 1 data goes where: it could all go to this node.
//for(auto itr = appl_exploits.begin(); itr != appl_exploits.end();){
// itr = appl_exploits.erase(itr);
//}
for (int r = 0; r < ex_groups.size() * (ttwo_comm.size()-1); r++){
ttwo_comm.irecv(mpi::any_source, 6, partial_appl_exploits);
for(auto itr=partial_appl_exploits.begin(); itr!=partial_appl_exploits.end(); itr++){
@ -234,6 +247,18 @@ void task_two(AGGenInstance &instance, int alloc, int two_alloc, boost::mpi::com
}
//loop through the vector
for(auto itr=appl_exploits.begin(); itr!=appl_exploits.end(); itr++){
//Check for new fact and new state that caused an update in the hash table and facts
while(world.iprobe(mpi::any_source, 3) || world.iprobe(mpi::any_source, 4)){
NetworkState update_state;
Quality update_fact;
world.recv(mpi::any_source, 3, update_state);
world.recv(mpi::any_source, 4, update_fact);
instance.facts.hash_table[update_state.compound_assign(update_fact)]=instance.facts.size();
instance.facts.length++;
instance.facts.str_vector.push_back(update_state.compound_assign(update_fact));
}
auto e = *itr;
auto exploit = std::get<0>(e);
@ -442,4 +467,4 @@ int send_check(boost::mpi::communicator &world, int curr_node){
send_to = 0;
return send_to;
}
}