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Part E

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Noah L. Schrick 2022-09-30 12:27:18 -05:00
parent d9e072f1f2
commit 0c85f75315
3 changed files with 10 additions and 1 deletions
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.~lock.Schrick-Noah_CS-6643_Lab-4.docx#
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,noah,NovaArchSys,30.09.2022 12:12,file:///home/noah/.config/libreoffice/4; ,noah,NovaArchSys,30.09.2022 12:27,file:///home/noah/.config/libreoffice/4;

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Schrick-Noah_CS-6643_Lab-4.R
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@ -130,3 +130,12 @@ p <- ggplot(mytopgene.data.df, aes(x=phenotype, y=mygene, fill=phenotype)) +
stat_boxplot(geom ='errorbar') + geom_boxplot() stat_boxplot(geom ='errorbar') + geom_boxplot()
p <- p + xlab("MDD versus HC") + ylab(mygene) p <- p + xlab("MDD versus HC") + ylab(mygene)
p p
#### Part E: Interpretation of top genes
top_cutoff <- 200
top_genes <- as.character(ttest_allgene.sorted[1:top_cutoff,1])
write.table(top_genes, sep="\t", file="", quote=F, row.names=F, col.names=F)
#### Optional 1: Identify Outliers

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Schrick-Noah_CS-6643_Lab-4.docx
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