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This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Arch Linux) (preloaded format=pdflatex 2022.11.8) 21 NOV 2022 16:54
entering extended mode
restricted \write18 enabled.
%&-line parsing enabled.
**mtDNA.tex
(./mtDNA.tex
LaTeX2e <2021-11-15> patch level 1
L3 programming layer <2022-04-10>
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Package graphics Info: Driver file: pdftex.def on input line 107.
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File: pdftex.def 2020/10/05 v1.2a Graphics/color driver for pdftex
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Package: amssymb 2013/01/14 v3.01 AMS font symbols
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Package: amsfonts 2013/01/14 v3.01 Basic AMSFonts support
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LaTeX Font Info: Redeclaring math symbol \hbar on input line 98.
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File: l3backend-pdftex.def 2022-04-14 L3 backend support: PDF output (pdfTeX)
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No file mtDNA.aux.
\openout1 = `mtDNA.aux'.
LaTeX Font Info: Checking defaults for OML/cmm/m/it on input line 24.
LaTeX Font Info: ... okay on input line 24.
LaTeX Font Info: Checking defaults for OMS/cmsy/m/n on input line 24.
LaTeX Font Info: ... okay on input line 24.
LaTeX Font Info: Checking defaults for OT1/cmr/m/n on input line 24.
LaTeX Font Info: ... okay on input line 24.
LaTeX Font Info: Checking defaults for T1/cmr/m/n on input line 24.
LaTeX Font Info: ... okay on input line 24.
LaTeX Font Info: Checking defaults for TS1/cmr/m/n on input line 24.
LaTeX Font Info: ... okay on input line 24.
LaTeX Font Info: Checking defaults for OMX/cmex/m/n on input line 24.
LaTeX Font Info: ... okay on input line 24.
LaTeX Font Info: Checking defaults for U/cmr/m/n on input line 24.
LaTeX Font Info: ... okay on input line 24.
(/usr/share/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
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Package: epstopdf-base 2020-01-24 v2.11 Base part for package epstopdf
Package epstopdf-base Info: Redefining graphics rule for `.eps' on input line 4
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File: epstopdf-sys.cfg 2010/07/13 v1.3 Configuration of (r)epstopdf for TeX Liv
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(/tmp/Rtmp9tSm8e/seq57d10064df.fasta:
Runaway argument?
! Paragraph ended before \inf@@get was complete.
<to be read again>
\par
l.25 ...hade}{/tmp/Rtmp9tSm8e/seq57d10064df.fasta}
I suspect you've forgotten a `}', causing me to apply this
control sequence to too much text. How can we recover?
My plan is to forget the whole thing and hope for the best.
! Misplaced alignment tab character &.
\msfline ->\par &
& & & @
l.25 ...hade}{/tmp/Rtmp9tSm8e/seq57d10064df.fasta}
I can't figure out why you would want to use a tab mark
here. If you just want an ampersand, the remedy is
simple: Just type `I\&' now. But if some right brace
up above has ended a previous alignment prematurely,
you're probably due for more error messages, and you
might try typing `S' now just to see what is salvageable.
! Misplaced alignment tab character &.
\msfline ->\par & &
& & @
l.25 ...hade}{/tmp/Rtmp9tSm8e/seq57d10064df.fasta}
I can't figure out why you would want to use a tab mark
here. If you just want an ampersand, the remedy is
simple: Just type `I\&' now. But if some right brace
up above has ended a previous alignment prematurely,
you're probably due for more error messages, and you
might try typing `S' now just to see what is salvageable.
! Misplaced alignment tab character &.
\msfline ->\par & & &
& @
l.25 ...hade}{/tmp/Rtmp9tSm8e/seq57d10064df.fasta}
I can't figure out why you would want to use a tab mark
here. If you just want an ampersand, the remedy is
simple: Just type `I\&' now. But if some right brace
up above has ended a previous alignment prematurely,
you're probably due for more error messages, and you
might try typing `S' now just to see what is salvageable.
! Misplaced alignment tab character &.
\msfline ->\par & & & &
@
l.25 ...hade}{/tmp/Rtmp9tSm8e/seq57d10064df.fasta}
I can't figure out why you would want to use a tab mark
here. If you just want an ampersand, the remedy is
simple: Just type `I\&' now. But if some right brace
up above has ended a previous alignment prematurely,
you're probably due for more error messages, and you
might try typing `S' now just to see what is salvageable.
Runaway argument?
! Paragraph ended before \check@letter was complete.
<to be read again>
\par
l.25 ...hade}{/tmp/Rtmp9tSm8e/seq57d10064df.fasta}
I suspect you've forgotten a `}', causing me to apply this
control sequence to too much text. How can we recover?
My plan is to forget the whole thing and hope for the best.
Runaway argument?
! Paragraph ended before \firstchar@get was complete.
<to be read again>
\par
l.25 ...hade}{/tmp/Rtmp9tSm8e/seq57d10064df.fasta}
I suspect you've forgotten a `}', causing me to apply this
control sequence to too much text. How can we recover?
My plan is to forget the whole thing and hope for the best.
Runaway argument?
! Paragraph ended before \firstchar@get was complete.
<to be read again>
\par
l.47 \end{texshade}
I suspect you've forgotten a `}', causing me to apply this
control sequence to too much text. How can we recover?
My plan is to forget the whole thing and hope for the best.
Runaway argument?
! Paragraph ended before \res@get was complete.
<to be read again>
\par
l.47 \end{texshade}
I suspect you've forgotten a `}', causing me to apply this
control sequence to too much text. How can we recover?
My plan is to forget the whole thing and hope for the best.
! Misplaced alignment tab character &.
\seq@line ->\par &
@
l.47 \end{texshade}
I can't figure out why you would want to use a tab mark
here. If you just want an ampersand, the remedy is
simple: Just type `I\&' now. But if some right brace
up above has ended a previous alignment prematurely,
you're probably due for more error messages, and you
might try typing `S' now just to see what is salvageable.
. . . . . [1
Non-PDF special ignored!
<special> papersize=794.96999pt,614.295pt
{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] )
LaTeX Font Info: Trying to load font information for U+msa on input line 47.
(/usr/share/texmf-dist/tex/latex/amsfonts/umsa.fd
File: umsa.fd 2013/01/14 v3.01 AMS symbols A
)
LaTeX Font Info: Trying to load font information for U+msb on input line 47.
(/usr/share/texmf-dist/tex/latex/amsfonts/umsb.fd
File: umsb.fd 2013/01/14 v3.01 AMS symbols B
) [2] (./mtDNA.aux) )
Here is how much of TeX's memory you used:
8179 strings out of 478238
97095 string characters out of 5850456
1334999 words of memory out of 5000000
26433 multiletter control sequences out of 15000+600000
471599 words of font info for 39 fonts, out of 8000000 for 9000
1141 hyphenation exceptions out of 8191
541i,6n,65p,182b,4214s stack positions out of 5000i,500n,10000p,200000b,80000s
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Output written on mtDNA.pdf (2 pages, 86917 bytes).
PDF statistics:
26 PDF objects out of 1000 (max. 8388607)
15 compressed objects within 1 object stream
0 named destinations out of 1000 (max. 500000)
1 words of extra memory for PDF output out of 10000 (max. 10000000)