WARNING: could not remove file or directory "base/144841": Directory not empty WARNING: some useless files may be left behind in old database directory "base/144841" terminate called after throwing an instance of 'std::bad_alloc' what(): std::bad_alloc [compute05:01855] *** Process received signal *** [compute05:01855] Signal: Aborted (6) [compute05:01855] Signal code: (-6) [compute05:01855] [ 0] /lib64/libpthread.so.0(+0xf7e0)[0x7fa3545527e0] [compute05:01855] [ 1] /lib64/libc.so.6(gsignal+0x35)[0x7fa3541e1495] [compute05:01855] [ 2] /lib64/libc.so.6(abort+0x175)[0x7fa3541e2c75] [compute05:01855] [ 3] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x915c2)[0x7fa354eb95c2] [compute05:01855] [ 4] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8f4a6)[0x7fa354eb74a6] [compute05:01855] [ 5] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8e469)[0x7fa354eb6469] [compute05:01855] [ 6] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(__gxx_personality_v0+0x2c5)[0x7fa354eb6e25] [compute05:01855] [ 7] /opt/apps/gcc/8.2.0/lib64/libgcc_s.so.1(+0x104c3)[0x7fa3547704c3] [compute05:01855] [ 8] /opt/apps/gcc/8.2.0/lib64/libgcc_s.so.1(_Unwind_RaiseException+0x2b1)[0x7fa354770a21] [compute05:01855] [ 9] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(__cxa_throw+0x36)[0x7fa354eb7716] [compute05:01855] [10] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8fbec)[0x7fa354eb7bec] [compute05:01855] [11] ./ag_gen(_ZN9__gnu_cxx13new_allocatorI4EdgeE8allocateEmPKv+0x4a)[0x5e1616] [compute05:01855] [12] ./ag_gen(_ZNSt16allocator_traitsISaI4EdgeEE8allocateERS1_m+0x28)[0x5db6f3] [compute05:01855] [13] ./ag_gen(_ZNSt12_Vector_baseI4EdgeSaIS0_EE11_M_allocateEm+0x2a)[0x5d5858] [compute05:01855] [14] ./ag_gen(_ZNSt6vectorI4EdgeSaIS0_EE17_M_realloc_insertIJRKS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_+0x80)[0x621bb4] [compute05:01855] [15] ./ag_gen(_ZNSt6vectorI4EdgeSaIS0_EE9push_backERKS0_+0x7b)[0x61d891] [compute05:01855] [16] ./ag_gen[0x61833a] [compute05:01855] [17] /opt/apps/gcc/8.2.0/lib64/libgomp.so.1(GOMP_parallel+0x3f)[0x7fa354984c5f] [compute05:01855] [18] ./ag_gen(_ZN5AGGen8generateEbiiidRN5boost3mpi12communicatorE+0x54b)[0x6177b9] [compute05:01855] [19] ./ag_gen(main+0x11f7)[0x5c3b4d] [compute05:01855] [20] /lib64/libc.so.6(__libc_start_main+0xfd)[0x7fa3541cdd1d] [compute05:01855] [21] ./ag_gen[0x5c0ff9] [compute05:01855] *** End of error message *** -------------------------------------------------------------------------- Primary job terminated normally, but 1 process returned a non-zero exit code. Per user-direction, the job has been aborted. -------------------------------------------------------------------------- -------------------------------------------------------------------------- mpirun noticed that process rank 0 with PID 1855 on node compute05 exited on signal 6 (Aborted). --------------------------------------------------------------------------