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"command": "/usr/bin/cc -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -I/usr/include/postgresql -I\"/home/noah/Documents/School/Thesis Work/ag_parallel/src\" -g -pthread -o CMakeFiles/ag_gen.dir/src/util/str_array.c.o -c \"/home/noah/Documents/School/Thesis Work/ag_parallel/src/util/str_array.c\"",
|
||||
"file": "/home/noah/Documents/School/Thesis Work/ag_parallel/src/util/str_array.c"
|
||||
"directory": "/home/nschrick/ag_parallel/build",
|
||||
"command": "/opt/apps/gcc/8.2.0/bin/gcc -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -I/usr/include/postgresql -I/home/nschrick/ag_parallel/src -isystem /home/nschrick/pkg/boost/1.77.0/include -isystem /storage/home/nschrick/pkg/openmpi/4.1.2/include -isystem /home/nschrick/pkg/openmpi/4.1.2/include -g -pthread -o CMakeFiles/ag_gen.dir/src/util/str_array.c.o -c /home/nschrick/ag_parallel/src/util/str_array.c",
|
||||
"file": "/home/nschrick/ag_parallel/src/util/str_array.c"
|
||||
},
|
||||
{
|
||||
"directory": "/home/noah/Documents/School/Thesis Work/ag_parallel/build",
|
||||
"command": "/usr/bin/cc -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -I/usr/include/postgresql -I\"/home/noah/Documents/School/Thesis Work/ag_parallel/src\" -g -pthread -o CMakeFiles/ag_gen.dir/src/util/vector.c.o -c \"/home/noah/Documents/School/Thesis Work/ag_parallel/src/util/vector.c\"",
|
||||
"file": "/home/noah/Documents/School/Thesis Work/ag_parallel/src/util/vector.c"
|
||||
"directory": "/home/nschrick/ag_parallel/build",
|
||||
"command": "/opt/apps/gcc/8.2.0/bin/gcc -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -I/usr/include/postgresql -I/home/nschrick/ag_parallel/src -isystem /home/nschrick/pkg/boost/1.77.0/include -isystem /storage/home/nschrick/pkg/openmpi/4.1.2/include -isystem /home/nschrick/pkg/openmpi/4.1.2/include -g -pthread -o CMakeFiles/ag_gen.dir/src/util/vector.c.o -c /home/nschrick/ag_parallel/src/util/vector.c",
|
||||
"file": "/home/nschrick/ag_parallel/src/util/vector.c"
|
||||
},
|
||||
{
|
||||
"directory": "/home/noah/Documents/School/Thesis Work/ag_parallel/build",
|
||||
"command": "/usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -I/usr/include/postgresql -I\"/home/noah/Documents/School/Thesis Work/ag_parallel/src\" -std=c++14 -fopenmp -DREDIS -g -g -O0 -ggdb -Wall -fopenmp -pedantic -pthread -o CMakeFiles/ag_gen.dir/src/mpi/serialize.cpp.o -c \"/home/noah/Documents/School/Thesis Work/ag_parallel/src/mpi/serialize.cpp\"",
|
||||
"file": "/home/noah/Documents/School/Thesis Work/ag_parallel/src/mpi/serialize.cpp"
|
||||
"directory": "/home/nschrick/ag_parallel/build",
|
||||
"command": "/opt/apps/gcc/8.2.0/bin/g++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -I/usr/include/postgresql -I/home/nschrick/ag_parallel/src -isystem /home/nschrick/pkg/boost/1.77.0/include -isystem /storage/home/nschrick/pkg/openmpi/4.1.2/include -isystem /home/nschrick/pkg/openmpi/4.1.2/include -std=c++14 -fopenmp -g -g -O0 -ggdb -Wall -fopenmp -pedantic -pthread -o CMakeFiles/ag_gen.dir/src/mpi/serialize.cpp.o -c /home/nschrick/ag_parallel/src/mpi/serialize.cpp",
|
||||
"file": "/home/nschrick/ag_parallel/src/mpi/serialize.cpp"
|
||||
},
|
||||
{
|
||||
"directory": "/home/noah/Documents/School/Thesis Work/ag_parallel/build",
|
||||
"command": "/usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -I/usr/include/postgresql -I\"/home/noah/Documents/School/Thesis Work/ag_parallel/src\" -std=c++14 -fopenmp -DREDIS -g -g -O0 -ggdb -Wall -fopenmp -pedantic -pthread -o CMakeFiles/ag_gen.dir/src/mpi/tasks.cpp.o -c \"/home/noah/Documents/School/Thesis Work/ag_parallel/src/mpi/tasks.cpp\"",
|
||||
"file": "/home/noah/Documents/School/Thesis Work/ag_parallel/src/mpi/tasks.cpp"
|
||||
},
|
||||
{
|
||||
"directory": "/home/noah/Documents/School/Thesis Work/ag_parallel/build",
|
||||
"command": "/usr/bin/cc -I/usr/include/postgresql -I\"/home/noah/Documents/School/Thesis Work/ag_parallel/src\" -g -o CMakeFiles/dynstr_test.dir/src/util/mem.c.o -c \"/home/noah/Documents/School/Thesis Work/ag_parallel/src/util/mem.c\"",
|
||||
"file": "/home/noah/Documents/School/Thesis Work/ag_parallel/src/util/mem.c"
|
||||
},
|
||||
{
|
||||
"directory": "/home/noah/Documents/School/Thesis Work/ag_parallel/build",
|
||||
"command": "/usr/bin/cc -I/usr/include/postgresql -I\"/home/noah/Documents/School/Thesis Work/ag_parallel/src\" -g -o CMakeFiles/dynstr_test.dir/src/tests/mem_test.c.o -c \"/home/noah/Documents/School/Thesis Work/ag_parallel/src/tests/mem_test.c\"",
|
||||
"file": "/home/noah/Documents/School/Thesis Work/ag_parallel/src/tests/mem_test.c"
|
||||
"directory": "/home/nschrick/ag_parallel/build",
|
||||
"command": "/opt/apps/gcc/8.2.0/bin/g++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -I/usr/include/postgresql -I/home/nschrick/ag_parallel/src -isystem /home/nschrick/pkg/boost/1.77.0/include -isystem /storage/home/nschrick/pkg/openmpi/4.1.2/include -isystem /home/nschrick/pkg/openmpi/4.1.2/include -std=c++14 -fopenmp -g -g -O0 -ggdb -Wall -fopenmp -pedantic -pthread -o CMakeFiles/ag_gen.dir/src/mpi/tasks.cpp.o -c /home/nschrick/ag_parallel/src/mpi/tasks.cpp",
|
||||
"file": "/home/nschrick/ag_parallel/src/mpi/tasks.cpp"
|
||||
}
|
||||
]
|
||||
@ -1519,12 +1519,12 @@ AGGenInstance &AGGen::sg_generate(bool batch_process, int batch_num, int numThrd
|
||||
//Let root node we finished, but only if we have done work since our last message
|
||||
if(send_msg == 1){
|
||||
|
||||
if(localFrontier.size() != 0){
|
||||
world.isend(0, 2, 2);
|
||||
}
|
||||
else{
|
||||
world.isend(0, 2, 1);
|
||||
}
|
||||
//if(localFrontier.size() != 0){
|
||||
// world.isend(0, 2, 2);
|
||||
// }
|
||||
// else{
|
||||
// world.isend(0, 2, 1);
|
||||
//}
|
||||
send_msg = 0;
|
||||
std::cout << "Node " << world.rank() << " finished subgraphing work." << std::endl;
|
||||
|
||||
@ -1532,15 +1532,40 @@ AGGenInstance &AGGen::sg_generate(bool batch_process, int batch_num, int numThrd
|
||||
mpi::request lf_req = world.isend(0, 3, localFrontier);
|
||||
std::cout << "Node " << world.rank() << " has sent a localFrontier of size " << localFrontier.size() << std::endl;
|
||||
lf_req.wait();
|
||||
std::cout << "Node " << world.rank() << " has finished sending localFrontier" << std::endl;
|
||||
}
|
||||
//Send new states and edges, then clear worker instance
|
||||
mpi::request if_req = world.isend(0, 10, instance.factbases);
|
||||
mpi::request ie_req = world.isend(0, 11, instance.edges);
|
||||
if_req.wait();
|
||||
ie_req.wait();
|
||||
std::vector<Factbase>().swap(instance.factbases);
|
||||
int fb_send = 0;
|
||||
int ed_send = 0;
|
||||
if(instance.factbases.size() != 0){
|
||||
fb_send = 1;
|
||||
}
|
||||
if(instance.edges.size() != 0){
|
||||
ed_send = 1;
|
||||
}
|
||||
if(fb_send == 1){
|
||||
|
||||
std::cout << "Node " << world.rank() << " preparing to send new factbases" << std::endl;
|
||||
mpi::request if_req = world.isend(0, 10, instance.factbases);
|
||||
if_req.wait();
|
||||
std::vector<Factbase>().swap(instance.factbases);
|
||||
std::cout << "Node " << world.rank() << " finished sending new factbases" << std::endl;
|
||||
}
|
||||
if(ed_send == 1){
|
||||
mpi::request ie_req = world.isend(0, 11, instance.edges);
|
||||
ie_req.wait();
|
||||
std::vector<Edge>().swap(instance.edges);
|
||||
std::cout << "Node " << world.rank() << " preparing to send new edges" << std::endl;
|
||||
std::cout << "Node " << world.rank() << " finished sending new edges" << std::endl;
|
||||
}
|
||||
std::vector<FactbaseItems>().swap(instance.factbase_items);
|
||||
std::vector<Edge>().swap(instance.edges);
|
||||
|
||||
if(localFrontier.size() != 0){
|
||||
world.isend(0, 2, 2);
|
||||
}
|
||||
else{
|
||||
world.isend(0, 2, 1);
|
||||
}
|
||||
}
|
||||
|
||||
//Check for new fact and new state that caused an update in the hash table and facts
|
||||
@ -1551,10 +1576,12 @@ AGGenInstance &AGGen::sg_generate(bool batch_process, int batch_num, int numThrd
|
||||
}
|
||||
NetworkState update_state;
|
||||
Quality update_fact;
|
||||
|
||||
std::cout << "Node " << world.rank() << " receiving new hash state and fact" << std::endl;
|
||||
world.recv(mpi::any_source, 5, update_state);
|
||||
world.recv(mpi::any_source, 6, update_fact);
|
||||
//Update
|
||||
std::cout << "Node " << world.rank() << " finished receiving new state and fact" << std::endl;
|
||||
|
||||
instance.facts.hash_table[update_state.compound_assign(update_fact)]=instance.facts.size();
|
||||
instance.facts.length++;
|
||||
instance.facts.str_vector.push_back(update_state.compound_assign(update_fact));
|
||||
@ -1614,12 +1641,16 @@ AGGenInstance &AGGen::sg_generate(bool batch_process, int batch_num, int numThrd
|
||||
}
|
||||
std::vector<Factbase> node_factbases;
|
||||
std::vector<Edge> node_edges;
|
||||
if(world.iprobe(mpi::any_source, 10)){
|
||||
world.recv(mpi::any_source, 10, node_factbases);
|
||||
|
||||
world.recv(mpi::any_source, 10, node_factbases);
|
||||
world.recv(mpi::any_source, 11, node_edges);
|
||||
std::cout << "Merging states. Starting with: " << instance.factbases.size() << " states." << std::endl;
|
||||
}
|
||||
if(world.iprobe(mpi::any_source, 11)){
|
||||
world.recv(mpi::any_source, 11, node_edges);
|
||||
}
|
||||
std::cout << "Merging states. Starting with: " << instance.factbases.size() << " states." << std::endl;
|
||||
state_merge(node_factbases, node_edges, hash_map, instance, mem_threshold, world);
|
||||
std::cout << "Finished merging. Now have: " << instance.factbases.size() << " states." << std::endl;
|
||||
std::cout << "Finished merging. Now have: " << instance.factbases.size() << " states." << std::endl;
|
||||
}
|
||||
|
||||
//Nodes finish
|
||||
@ -1628,12 +1659,12 @@ AGGenInstance &AGGen::sg_generate(bool batch_process, int batch_num, int numThrd
|
||||
if(world.iprobe(w, 2)){
|
||||
world.recv(w, 2, dummy_finish);
|
||||
finish_count++;
|
||||
if(dummy_finish == 2){
|
||||
frontier_recv[w] = 1;
|
||||
}
|
||||
else{
|
||||
frontier_recv[w] = 0;
|
||||
}
|
||||
//if(dummy_finish == 2){
|
||||
// frontier_recv[w] = 1;
|
||||
//}
|
||||
//else{
|
||||
// frontier_recv[w] = 0;
|
||||
//}
|
||||
std::cout << "Root received subgraph finish message from node " << w << std::endl;
|
||||
}
|
||||
}
|
||||
@ -1667,12 +1698,25 @@ AGGenInstance &AGGen::sg_generate(bool batch_process, int batch_num, int numThrd
|
||||
*/
|
||||
}
|
||||
|
||||
std::cout << "Root received all signals from nodes" << std::endl;
|
||||
|
||||
//Receive node frontiers and merge them into root frontier
|
||||
std::cout << "Root received all signals from nodes" << std::endl;
|
||||
if(world.iprobe(mpi::any_source, 10) || world.iprobe(mpi::any_source, 11)){
|
||||
std::vector<Factbase> node_factbases;
|
||||
std::vector<Edge> node_edges;
|
||||
if(world.iprobe(mpi::any_source, 10)){
|
||||
world.recv(mpi::any_source, 10, node_factbases);
|
||||
}
|
||||
if(world.iprobe(mpi::any_source, 11)){
|
||||
world.recv(mpi::any_source, 11, node_edges);
|
||||
}
|
||||
std::cout << "Merging states. Starting with: " << instance.factbases.size() << " states." << std::endl;
|
||||
state_merge(node_factbases, node_edges, hash_map, instance, mem_threshold, world);
|
||||
std::cout << "Finished merging. Now have: " << instance.factbases.size() << " states." << std::endl;
|
||||
}
|
||||
//Receive node frontiers and merge them into root frontier
|
||||
for(int w = 2; w < world.size(); w++){
|
||||
//if(world.iprobe(w, 3)){
|
||||
if(frontier_recv[w] == 1){
|
||||
if(world.iprobe(w, 3)){
|
||||
std::deque<NetworkState> nodeFrontier;
|
||||
world.recv(w, 3, nodeFrontier);
|
||||
localFrontier.insert(localFrontier.begin(), \
|
||||
@ -1756,7 +1800,7 @@ AGGenInstance &AGGen::sg_generate(bool batch_process, int batch_num, int numThrd
|
||||
}
|
||||
std::cout << "Message Sends: " << msg_sends << std::endl;
|
||||
//if LocalFrontier is empty at this point and we did not send any messages, we're done
|
||||
if(localFrontier.empty() && msg_sends == 0){
|
||||
if(localFrontier.empty() && msg_sends == 0 && !world.iprobe(mpi::any_source, mpi::any_tag)){
|
||||
std::cout << "Root is sending finalize signal" << std::endl;
|
||||
finished_signal = 1;
|
||||
}
|
||||
|
||||
Loading…
x
Reference in New Issue
Block a user