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hammer 2022-02-08 17:30:55 -06:00
parent 215dd5c6f2
commit a7c3e9e0c2
4 changed files with 158 additions and 182 deletions
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74
build/Makefile
View File

@ -48,19 +48,19 @@ cmake_force:
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"command": "/usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -I/usr/include/postgresql -I\"/home/noah/Documents/School/Thesis Work/ag_parallel/src\" -std=c++14 -fopenmp -DREDIS -g -g -O0 -ggdb -Wall -fopenmp -pedantic -pthread -o CMakeFiles/ag_gen.dir/src/mpi/tasks.cpp.o -c \"/home/noah/Documents/School/Thesis Work/ag_parallel/src/mpi/tasks.cpp\"", "command": "/opt/apps/gcc/8.2.0/bin/g++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -I/usr/include/postgresql -I/home/nschrick/ag_parallel/src -isystem /home/nschrick/pkg/boost/1.77.0/include -isystem /storage/home/nschrick/pkg/openmpi/4.1.2/include -isystem /home/nschrick/pkg/openmpi/4.1.2/include -std=c++14 -fopenmp -g -g -O0 -ggdb -Wall -fopenmp -pedantic -pthread -o CMakeFiles/ag_gen.dir/src/mpi/tasks.cpp.o -c /home/nschrick/ag_parallel/src/mpi/tasks.cpp",
"file": "/home/noah/Documents/School/Thesis Work/ag_parallel/src/mpi/tasks.cpp" "file": "/home/nschrick/ag_parallel/src/mpi/tasks.cpp"
},
{
"directory": "/home/noah/Documents/School/Thesis Work/ag_parallel/build",
"command": "/usr/bin/cc -I/usr/include/postgresql -I\"/home/noah/Documents/School/Thesis Work/ag_parallel/src\" -g -o CMakeFiles/dynstr_test.dir/src/util/mem.c.o -c \"/home/noah/Documents/School/Thesis Work/ag_parallel/src/util/mem.c\"",
"file": "/home/noah/Documents/School/Thesis Work/ag_parallel/src/util/mem.c"
},
{
"directory": "/home/noah/Documents/School/Thesis Work/ag_parallel/build",
"command": "/usr/bin/cc -I/usr/include/postgresql -I\"/home/noah/Documents/School/Thesis Work/ag_parallel/src\" -g -o CMakeFiles/dynstr_test.dir/src/tests/mem_test.c.o -c \"/home/noah/Documents/School/Thesis Work/ag_parallel/src/tests/mem_test.c\"",
"file": "/home/noah/Documents/School/Thesis Work/ag_parallel/src/tests/mem_test.c"
} }
] ]

100
src/ag_gen/ag_gen.cpp
View File

@ -1519,12 +1519,12 @@ AGGenInstance &AGGen::sg_generate(bool batch_process, int batch_num, int numThrd
//Let root node we finished, but only if we have done work since our last message //Let root node we finished, but only if we have done work since our last message
if(send_msg == 1){ if(send_msg == 1){
if(localFrontier.size() != 0){ //if(localFrontier.size() != 0){
world.isend(0, 2, 2); // world.isend(0, 2, 2);
} // }
else{ // else{
world.isend(0, 2, 1); // world.isend(0, 2, 1);
} //}
send_msg = 0; send_msg = 0;
std::cout << "Node " << world.rank() << " finished subgraphing work." << std::endl; std::cout << "Node " << world.rank() << " finished subgraphing work." << std::endl;
@ -1532,15 +1532,40 @@ AGGenInstance &AGGen::sg_generate(bool batch_process, int batch_num, int numThrd
mpi::request lf_req = world.isend(0, 3, localFrontier); mpi::request lf_req = world.isend(0, 3, localFrontier);
std::cout << "Node " << world.rank() << " has sent a localFrontier of size " << localFrontier.size() << std::endl; std::cout << "Node " << world.rank() << " has sent a localFrontier of size " << localFrontier.size() << std::endl;
lf_req.wait(); lf_req.wait();
std::cout << "Node " << world.rank() << " has finished sending localFrontier" << std::endl;
} }
//Send new states and edges, then clear worker instance //Send new states and edges, then clear worker instance
mpi::request if_req = world.isend(0, 10, instance.factbases); int fb_send = 0;
mpi::request ie_req = world.isend(0, 11, instance.edges); int ed_send = 0;
if_req.wait(); if(instance.factbases.size() != 0){
ie_req.wait(); fb_send = 1;
std::vector<Factbase>().swap(instance.factbases); }
if(instance.edges.size() != 0){
ed_send = 1;
}
if(fb_send == 1){
std::cout << "Node " << world.rank() << " preparing to send new factbases" << std::endl;
mpi::request if_req = world.isend(0, 10, instance.factbases);
if_req.wait();
std::vector<Factbase>().swap(instance.factbases);
std::cout << "Node " << world.rank() << " finished sending new factbases" << std::endl;
}
if(ed_send == 1){
mpi::request ie_req = world.isend(0, 11, instance.edges);
ie_req.wait();
std::vector<Edge>().swap(instance.edges);
std::cout << "Node " << world.rank() << " preparing to send new edges" << std::endl;
std::cout << "Node " << world.rank() << " finished sending new edges" << std::endl;
}
std::vector<FactbaseItems>().swap(instance.factbase_items); std::vector<FactbaseItems>().swap(instance.factbase_items);
std::vector<Edge>().swap(instance.edges);
if(localFrontier.size() != 0){
world.isend(0, 2, 2);
}
else{
world.isend(0, 2, 1);
}
} }
//Check for new fact and new state that caused an update in the hash table and facts //Check for new fact and new state that caused an update in the hash table and facts
@ -1551,10 +1576,12 @@ AGGenInstance &AGGen::sg_generate(bool batch_process, int batch_num, int numThrd
} }
NetworkState update_state; NetworkState update_state;
Quality update_fact; Quality update_fact;
std::cout << "Node " << world.rank() << " receiving new hash state and fact" << std::endl;
world.recv(mpi::any_source, 5, update_state); world.recv(mpi::any_source, 5, update_state);
world.recv(mpi::any_source, 6, update_fact); world.recv(mpi::any_source, 6, update_fact);
//Update //Update
std::cout << "Node " << world.rank() << " finished receiving new state and fact" << std::endl;
instance.facts.hash_table[update_state.compound_assign(update_fact)]=instance.facts.size(); instance.facts.hash_table[update_state.compound_assign(update_fact)]=instance.facts.size();
instance.facts.length++; instance.facts.length++;
instance.facts.str_vector.push_back(update_state.compound_assign(update_fact)); instance.facts.str_vector.push_back(update_state.compound_assign(update_fact));
@ -1614,12 +1641,16 @@ AGGenInstance &AGGen::sg_generate(bool batch_process, int batch_num, int numThrd
} }
std::vector<Factbase> node_factbases; std::vector<Factbase> node_factbases;
std::vector<Edge> node_edges; std::vector<Edge> node_edges;
if(world.iprobe(mpi::any_source, 10)){
world.recv(mpi::any_source, 10, node_factbases); world.recv(mpi::any_source, 10, node_factbases);
world.recv(mpi::any_source, 11, node_edges);
std::cout << "Merging states. Starting with: " << instance.factbases.size() << " states." << std::endl; }
if(world.iprobe(mpi::any_source, 11)){
world.recv(mpi::any_source, 11, node_edges);
}
std::cout << "Merging states. Starting with: " << instance.factbases.size() << " states." << std::endl;
state_merge(node_factbases, node_edges, hash_map, instance, mem_threshold, world); state_merge(node_factbases, node_edges, hash_map, instance, mem_threshold, world);
std::cout << "Finished merging. Now have: " << instance.factbases.size() << " states." << std::endl; std::cout << "Finished merging. Now have: " << instance.factbases.size() << " states." << std::endl;
} }
//Nodes finish //Nodes finish
@ -1628,12 +1659,12 @@ AGGenInstance &AGGen::sg_generate(bool batch_process, int batch_num, int numThrd
if(world.iprobe(w, 2)){ if(world.iprobe(w, 2)){
world.recv(w, 2, dummy_finish); world.recv(w, 2, dummy_finish);
finish_count++; finish_count++;
if(dummy_finish == 2){ //if(dummy_finish == 2){
frontier_recv[w] = 1; // frontier_recv[w] = 1;
} //}
else{ //else{
frontier_recv[w] = 0; // frontier_recv[w] = 0;
} //}
std::cout << "Root received subgraph finish message from node " << w << std::endl; std::cout << "Root received subgraph finish message from node " << w << std::endl;
} }
} }
@ -1667,12 +1698,25 @@ AGGenInstance &AGGen::sg_generate(bool batch_process, int batch_num, int numThrd
*/ */
} }
std::cout << "Root received all signals from nodes" << std::endl; std::cout << "Root received all signals from nodes" << std::endl;
if(world.iprobe(mpi::any_source, 10) || world.iprobe(mpi::any_source, 11)){
//Receive node frontiers and merge them into root frontier std::vector<Factbase> node_factbases;
std::vector<Edge> node_edges;
if(world.iprobe(mpi::any_source, 10)){
world.recv(mpi::any_source, 10, node_factbases);
}
if(world.iprobe(mpi::any_source, 11)){
world.recv(mpi::any_source, 11, node_edges);
}
std::cout << "Merging states. Starting with: " << instance.factbases.size() << " states." << std::endl;
state_merge(node_factbases, node_edges, hash_map, instance, mem_threshold, world);
std::cout << "Finished merging. Now have: " << instance.factbases.size() << " states." << std::endl;
}
//Receive node frontiers and merge them into root frontier
for(int w = 2; w < world.size(); w++){ for(int w = 2; w < world.size(); w++){
//if(world.iprobe(w, 3)){ //if(world.iprobe(w, 3)){
if(frontier_recv[w] == 1){ if(world.iprobe(w, 3)){
std::deque<NetworkState> nodeFrontier; std::deque<NetworkState> nodeFrontier;
world.recv(w, 3, nodeFrontier); world.recv(w, 3, nodeFrontier);
localFrontier.insert(localFrontier.begin(), \ localFrontier.insert(localFrontier.begin(), \
@ -1756,7 +1800,7 @@ AGGenInstance &AGGen::sg_generate(bool batch_process, int batch_num, int numThrd
} }
std::cout << "Message Sends: " << msg_sends << std::endl; std::cout << "Message Sends: " << msg_sends << std::endl;
//if LocalFrontier is empty at this point and we did not send any messages, we're done //if LocalFrontier is empty at this point and we did not send any messages, we're done
if(localFrontier.empty() && msg_sends == 0){ if(localFrontier.empty() && msg_sends == 0 && !world.iprobe(mpi::any_source, mpi::any_tag)){
std::cout << "Root is sending finalize signal" << std::endl; std::cout << "Root is sending finalize signal" << std::endl;
finished_signal = 1; finished_signal = 1;
} }