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Reformatting prints and adding debug prints

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This commit is contained in:
Noah L. Schrick 2022-01-29 15:41:11 -06:00
parent 0e0f53b07d
commit a4fcd8fbe7
10 changed files with 194 additions and 307 deletions
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7
.gitignore vendored
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@ -87,7 +87,10 @@ cmake*/
._* ._*
#*.dot *.dot
*.circo *.circo
#*.svg *.svg
#DB Config
config.ini
/build/config.ini

74
build/Makefile
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@ -48,19 +48,19 @@ cmake_force:
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@ -68,7 +68,7 @@ CMAKE_BINARY_DIR = /home/nschrick/ag_parallel/build
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@ -78,7 +78,7 @@ edit_cache/fast: edit_cache
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@ -615,6 +665,7 @@ src/util/mem.o: src/util/mem.c.o
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@ -761,7 +814,9 @@ help:
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@ -804,6 +859,9 @@ help:
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166
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@ -1,132 +1,142 @@
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"command": "/opt/apps/gcc/8.2.0/bin/g++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -I/usr/include/postgresql -I/home/nschrick/ag_parallel/src -isystem /home/nschrick/pkg/boost/1.77.0/include -isystem /storage/home/nschrick/pkg/openmpi/4.1.2/include -isystem /home/nschrick/pkg/openmpi/4.1.2/include -std=c++14 -fopenmp -g -g -O0 -ggdb -Wall -fopenmp -pedantic -pthread -o CMakeFiles/ag_gen.dir/src/mpi/tasks.cpp.o -c /home/nschrick/ag_parallel/src/mpi/tasks.cpp", "command": "/usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -I/usr/include/postgresql -I\"/home/noah/Documents/School/Thesis Work/ag_parallel/src\" -std=c++14 -fopenmp -DREDIS -g -g -O0 -ggdb -Wall -fopenmp -pedantic -pthread -o CMakeFiles/ag_gen.dir/src/mpi/tasks.cpp.o -c \"/home/noah/Documents/School/Thesis Work/ag_parallel/src/mpi/tasks.cpp\"",
"file": "/home/nschrick/ag_parallel/src/mpi/tasks.cpp" "file": "/home/noah/Documents/School/Thesis Work/ag_parallel/src/mpi/tasks.cpp"
},
{
"directory": "/home/noah/Documents/School/Thesis Work/ag_parallel/build",
"command": "/usr/bin/cc -I/usr/include/postgresql -I\"/home/noah/Documents/School/Thesis Work/ag_parallel/src\" -g -o CMakeFiles/dynstr_test.dir/src/util/mem.c.o -c \"/home/noah/Documents/School/Thesis Work/ag_parallel/src/util/mem.c\"",
"file": "/home/noah/Documents/School/Thesis Work/ag_parallel/src/util/mem.c"
},
{
"directory": "/home/noah/Documents/School/Thesis Work/ag_parallel/build",
"command": "/usr/bin/cc -I/usr/include/postgresql -I\"/home/noah/Documents/School/Thesis Work/ag_parallel/src\" -g -o CMakeFiles/dynstr_test.dir/src/tests/mem_test.c.o -c \"/home/noah/Documents/School/Thesis Work/ag_parallel/src/tests/mem_test.c\"",
"file": "/home/noah/Documents/School/Thesis Work/ag_parallel/src/tests/mem_test.c"
} }
] ]

6
build/config.ini
View File

@ -1,6 +0,0 @@
[database]
name = ag_gen
host = compute03
port = 5240
username = ag_gen
password = 8PZQc79NUZ3FjqSB

191
build/slurm_reports/job.29742.err
View File

@ -1,191 +0,0 @@
terminate called after throwing an instance of 'DBException'
terminate called after throwing an instance of 'DBException'
what(): Database connection failed: dbname=tmp user=ag_gen host=login port=5420 password=8PZQc79NUZ3FjqSB
could not connect to server: Connection refused
Is the server running on host "login" (10.1.100.100) and accepting
TCP/IP connections on port 5420?
what(): Database connection failed: dbname=tmp user=ag_gen host=login port=5420 password=8PZQc79NUZ3FjqSB
could not connect to server: Connection refused
Is the server running on host "login" (10.1.100.100) and accepting
TCP/IP connections on port 5420?
[compute03:25307] *** Process received signal ***
[compute03:25307] Signal: Aborted (6)
[compute03:25307] Signal code: (-6)
[compute03:25306] *** Process received signal ***
[compute03:25306] Signal: Aborted (6)
[compute03:25306] Signal code: (-6)
[compute03:25307] [ 0] /lib64/libpthread.so.0(+0xf7e0)[0x7f9d3a1677e0]
[compute03:25307] [ 1] terminate called after throwing an instance of 'DBException'
[compute03:25306] [ 0] /lib64/libpthread.so.0(+0xf7e0)[0x7f6f98b587e0]
[compute03:25306] [ 1] /lib64/libc.so.6(gsignal+0x35)[0x7f9d39df6495]
[compute03:25307] [ 2] /lib64/libc.so.6(gsignal+0x35)[0x7f6f987e7495]
[compute03:25306] [ 2] terminate called after throwing an instance of 'DBException'
what(): Database connection failed: dbname=tmp user=ag_gen host=login port=5420 password=8PZQc79NUZ3FjqSB
could not connect to server: Connection refused
Is the server running on host "login" (10.1.100.100) and accepting
TCP/IP connections on port 5420?
[compute04:24809] *** Process received signal ***
/lib64/libc.so.6(abort+0x175)[0x7f9d39df7c75]
[compute03:25307] [ 3] /lib64/libc.so.6(abort+0x175)[0x7f6f987e8c75]
[compute03:25306] [ 3] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x915c2)[0x7f9d3aace5c2]
[compute03:25307] [ 4] what(): Database connection failed: dbname=tmp user=ag_gen host=login port=5420 password=8PZQc79NUZ3FjqSB
could not connect to server: Connection refused
Is the server running on host "login" (10.1.100.100) and accepting
TCP/IP connections on port 5420?
[compute04:24810] *** Process received signal ***
[compute04:24810] Signal: Aborted (6)
[compute04:24810] Signal code: (-6)
/opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8f4a6)[0x7f9d3aacc4a6]
[compute03:25307] [ 5] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x915c2)[0x7f6f994bf5c2]
[compute03:25306] [ 4] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8f4e1)[0x7f9d3aacc4e1]
[compute03:25307] [ 6] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8f4a6)[0x7f6f994bd4a6]
[compute03:25306] [ 5] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8f723)[0x7f9d3aacc723]
[compute03:25307] [ 7] [compute04:24809] Signal: Aborted (6)
[compute04:24809] Signal code: (-6)
[compute04:24809] [ 0] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8f4e1)[0x7f6f994bd4e1]
[compute03:25306] [ 6] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8f723)[0x7f6f994bd723]
[compute03:25306] [ 7] [compute04:24810] [ 0] /lib64/libpthread.so.0(+0xf7e0)[0x7f88c631b7e0]
[compute04:24810] [ 1] /lib64/libc.so.6(gsignal+0x35)[0x7f88c5faa495]
[compute04:24810] [ 2] ./ag_gen(_ZN10Connection7connectERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x15e)[0x63cb74]
[compute03:25307] [ 8] /lib64/libpthread.so.0(+0xf7e0)[0x7f93996627e0]
[compute04:24809] [ 1] /lib64/libc.so.6(gsignal+0x35)[0x7f93992f1495]
[compute04:24809] [ 2] /lib64/libc.so.6(abort+0x175)[0x7f93992f2c75]
./ag_gen(_ZN10Connection7connectERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x15e)[0x63cb74]
[compute03:25306] [ 8] ./ag_gen(_ZN2DB7connectERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x23)[0x63d10b]
[compute03:25307] [ 9] /lib64/libc.so.6(abort+0x175)[0x7f88c5fabc75]
[compute04:24810] [ 3] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x915c2)[0x7f88c6c825c2]
[compute04:24810] [ 4] [compute04:24809] [ 3] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x915c2)[0x7f9399fc95c2]
[compute04:24809] [ 4] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8f4a6)[0x7f88c6c804a6]
[compute04:24810] [ 5] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8f4e1)[0x7f88c6c804e1]
[compute04:24810] [ 6] ./ag_gen(_ZN2DB7connectERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x23)[0x63d10b]
[compute03:25306] [ 9] ./ag_gen(_Z7init_dbNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x1d)[0x634ab5]
[compute03:25307] [10] ./ag_gen(main+0x7e8)[0x5c2d8e]
[compute03:25307] [11] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8f4a6)[0x7f9399fc74a6]
[compute04:24809] [ 5] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8f4e1)[0x7f9399fc74e1]
[compute04:24809] [ 6] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8f723)[0x7f9399fc7723]
[compute04:24809] [ 7] /lib64/libc.so.6(__libc_start_main+0xfd)[0x7f9d39de2d1d]
[compute03:25307] [12] ./ag_gen[0x5c0c49]
[compute03:25307] *** End of error message ***
/opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8f723)[0x7f88c6c80723]
[compute04:24810] [ 7] ./ag_gen(_Z7init_dbNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x1d)[0x634ab5]
[compute03:25306] [10] ./ag_gen(main+0x7e8)[0x5c2d8e]
[compute03:25306] [11] ./ag_gen(_ZN10Connection7connectERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x15e)[0x63cb74]
[compute04:24809] [ 8] /lib64/libc.so.6(__libc_start_main+0xfd)[0x7f6f987d3d1d]
[compute03:25306] [12] ./ag_gen(_ZN10Connection7connectERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x15e)[0x63cb74]
[compute04:24810] [ 8] terminate called after throwing an instance of 'DBException'
./ag_gen[0x5c0c49]
[compute03:25306] *** End of error message ***
terminate called after throwing an instance of 'DBException'
./ag_gen(_ZN2DB7connectERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x23)[0x63d10b]
[compute04:24809] [ 9] terminate called after throwing an instance of 'DBException'
what(): Database connection failed: dbname=tmp user=ag_gen host=login port=5420 password=8PZQc79NUZ3FjqSB
could not connect to server: Connection refused
Is the server running on host "login" (10.1.100.100) and accepting
TCP/IP connections on port 5420?
terminate called after throwing an instance of 'DBException'
what(): Database connection failed: dbname=tmp user=ag_gen host=login port=5420 password=8PZQc79NUZ3FjqSB
could not connect to server: Connection refused
Is the server running on host "login" (10.1.100.100) and accepting
TCP/IP connections on port 5420?
./ag_gen(_ZN2DB7connectERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x23)[0x63d10b]
[compute04:24810] [ 9] what(): Database connection failed: dbname=tmp user=ag_gen host=login port=5420 password=8PZQc79NUZ3FjqSB
could not connect to server: Connection refused
Is the server running on host "login" (10.1.100.100) and accepting
TCP/IP connections on port 5420?
[compute06:24528] *** Process received signal ***
[compute06:24528] Signal: Aborted (6)
[compute06:24528] Signal code: (-6)
what(): Database connection failed: dbname=tmp user=ag_gen host=login port=5420 password=8PZQc79NUZ3FjqSB
could not connect to server: Connection refused
Is the server running on host "login" (10.1.100.100) and accepting
TCP/IP connections on port 5420?
[compute05:24497] *** Process received signal ***
[compute05:24497] Signal: Aborted (6)
[compute05:24497] Signal code: (-6)
./ag_gen(_Z7init_dbNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x1d)[0x634ab5]
[compute04:24809] [10] [compute06:24527] *** Process received signal ***
[compute06:24527] Signal: Aborted (6)
[compute06:24527] Signal code: (-6)
[compute05:24496] *** Process received signal ***
[compute05:24496] Signal: Aborted (6)
[compute05:24496] Signal code: (-6)
./ag_gen(_Z7init_dbNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x1d)[0x634ab5]
[compute04:24810] [10] [compute06:24528] [ 0] /lib64/libpthread.so.0(+0xf7e0)[0x7f86803b07e0]
[compute06:24528] [ 1] [compute05:24497] [ 0] /lib64/libpthread.so.0(+0xf7e0)[0x7f1aef7697e0]
./ag_gen(main+0x7e8)[0x5c2d8e]
[compute04:24809] [11] /lib64/libc.so.6(__libc_start_main+0xfd)[0x7f93992ddd1d]
[compute04:24809] [12] [compute06:24527] [ 0] /lib64/libpthread.so.0(+0xf7e0)[0x7fe3588c97e0]
[compute06:24527] [ 1] [compute05:24496] [ 0] /lib64/libpthread.so.0(+0xf7e0)[0x7fba08a7e7e0]
[compute05:24496] [ 1] ./ag_gen(main+0x7e8)[0x5c2d8e]
[compute04:24810] [11] /lib64/libc.so.6(__libc_start_main+0xfd)[0x7f88c5f96d1d]
[compute04:24810] [12] /lib64/libc.so.6(gsignal+0x35)[0x7f868003f495]
[compute06:24528] [ 2] [compute05:24497] [ 1] /lib64/libc.so.6(gsignal+0x35)[0x7f1aef3f8495]
[compute05:24497] [ 2] ./ag_gen[0x5c0c49]
[compute04:24809] *** End of error message ***
/lib64/libc.so.6(gsignal+0x35)[0x7fe358558495]
[compute06:24527] [ 2] /lib64/libc.so.6(abort+0x175)[0x7fe358559c75]
[compute06:24527] [ 3] /lib64/libc.so.6(gsignal+0x35)[0x7fba0870d495]
[compute05:24496] [ 2] /lib64/libc.so.6(abort+0x175)[0x7fba0870ec75]
[compute05:24496] [ 3] ./ag_gen[0x5c0c49]
[compute04:24810] *** End of error message ***
/lib64/libc.so.6(abort+0x175)[0x7f8680040c75]
[compute06:24528] [ 3] /lib64/libc.so.6(abort+0x175)[0x7f1aef3f9c75]
[compute05:24497] [ 3] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x915c2)[0x7fe3592305c2]
[compute06:24527] [ 4] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x915c2)[0x7fba093e55c2]
[compute05:24496] [ 4] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x915c2)[0x7f8680d175c2]
[compute06:24528] [ 4] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8f4a6)[0x7f8680d154a6]
[compute06:24528] [ 5] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x915c2)[0x7f1af00d05c2]
[compute05:24497] [ 4] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8f4a6)[0x7f1af00ce4a6]
[compute05:24497] [ 5] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8f4a6)[0x7fe35922e4a6]
[compute06:24527] [ 5] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8f4a6)[0x7fba093e34a6]
[compute05:24496] [ 5] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8f4e1)[0x7fba093e34e1]
[compute05:24496] [ 6] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8f4e1)[0x7f8680d154e1]
[compute06:24528] [ 6] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8f723)[0x7f8680d15723]
[compute06:24528] [ 7] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8f4e1)[0x7f1af00ce4e1]
[compute05:24497] [ 6] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8f723)[0x7f1af00ce723]
[compute05:24497] [ 7] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8f4e1)[0x7fe35922e4e1]
[compute06:24527] [ 6] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8f723)[0x7fe35922e723]
[compute06:24527] [ 7] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8f723)[0x7fba093e3723]
[compute05:24496] [ 7] ./ag_gen(_ZN10Connection7connectERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x15e)[0x63cb74]
[compute06:24528] [ 8] ./ag_gen(_ZN10Connection7connectERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x15e)[0x63cb74]
[compute05:24497] [ 8] ./ag_gen(_ZN10Connection7connectERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x15e)[0x63cb74]
[compute06:24527] [ 8] ./ag_gen(_ZN10Connection7connectERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x15e)[0x63cb74]
[compute05:24496] [ 8] ./ag_gen(_ZN2DB7connectERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x23)[0x63d10b]
[compute06:24528] [ 9] ./ag_gen(_ZN2DB7connectERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x23)[0x63d10b]
[compute05:24497] [ 9] ./ag_gen(_ZN2DB7connectERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x23)[0x63d10b]
[compute06:24527] [ 9] ./ag_gen(_ZN2DB7connectERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x23)[0x63d10b]
[compute05:24496] [ 9] ./ag_gen(_Z7init_dbNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x1d)[0x634ab5]
[compute06:24528] [10] ./ag_gen(_Z7init_dbNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x1d)[0x634ab5]
[compute05:24497] [10] ./ag_gen(main+0x7e8)[0x5c2d8e]
[compute06:24528] [11] ./ag_gen(main+0x7e8)[0x5c2d8e]
[compute05:24497] [11] ./ag_gen(_Z7init_dbNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x1d)[0x634ab5]
[compute06:24527] [10] ./ag_gen(_Z7init_dbNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x1d)[0x634ab5]
[compute05:24496] [10] /lib64/libc.so.6(__libc_start_main+0xfd)[0x7f868002bd1d]
[compute06:24528] [12] /lib64/libc.so.6(__libc_start_main+0xfd)[0x7f1aef3e4d1d]
[compute05:24497] [12] ./ag_gen[0x5c0c49]
[compute06:24528] *** End of error message ***
./ag_gen[0x5c0c49]
[compute05:24497] *** End of error message ***
./ag_gen(main+0x7e8)[0x5c2d8e]
[compute06:24527] [11] /lib64/libc.so.6(__libc_start_main+0xfd)[0x7fe358544d1d]
[compute06:24527] [12] ./ag_gen(main+0x7e8)[0x5c2d8e]
[compute05:24496] [11] ./ag_gen[0x5c0c49]
[compute06:24527] *** End of error message ***
/lib64/libc.so.6(__libc_start_main+0xfd)[0x7fba086f9d1d]
[compute05:24496] [12] ./ag_gen[0x5c0c49]
[compute05:24496] *** End of error message ***
--------------------------------------------------------------------------
Primary job terminated normally, but 1 process returned
a non-zero exit code. Per user-direction, the job has been aborted.
--------------------------------------------------------------------------
--------------------------------------------------------------------------
mpirun noticed that process rank 0 with PID 0 on node compute03 exited on signal 6 (Aborted).
--------------------------------------------------------------------------

6
config.ini
View File

@ -1,6 +0,0 @@
[database]
name = ag_gen
host = compute03
port = 5240
username = ag_gen
password = 8PZQc79NUZ3FjqSB

28
src/ag_gen/ag_gen.cpp
View File

@ -174,17 +174,21 @@ AGGenInstance &AGGen::generate(bool batch_process, int batch_size, int numThrd,
} }
//Print out the groups if desired //Print out the groups if desired
std::cout <<"\nThere are "<<ex_groups.size()<<" groups: "; if (world.rank() == 0){
for(int i=0; i<ex_groups.size(); i++){ std::cout <<"\nThere are "<<ex_groups.size()<<" groups: ";
std::cout<<ex_groups[i] << ". "; for(int i=0; i<ex_groups.size(); i++){
std::cout<<ex_groups[i] << ". ";
}
std::cout<<"\n";
} }
std::cout<<"\n";
auto counter = 0; auto counter = 0;
auto start = std::chrono::system_clock::now(); auto start = std::chrono::system_clock::now();
unsigned long esize = exploit_list.size(); unsigned long esize = exploit_list.size();
printf("esize: %lu\n", esize); if (world.rank() ==0){
printf("esize: %lu\n", esize);
}
bool save_queued = false; bool save_queued = false;
if (world.rank() == 0){ if (world.rank() == 0){
@ -335,8 +339,9 @@ AGGenInstance &AGGen::generate(bool batch_process, int batch_size, int numThrd,
*/ */
int frt_size=frontier.size(); int frt_size=frontier.size();
printf("The actual QSize to start using multiple threads is %d\n",frt_size); if (world.rank() ==0){
printf("The actual QSize to start using multiple threads is %d\n",frt_size);
}
double total_t=0.0; double total_t=0.0;
//unti:ms //unti:ms
@ -393,6 +398,7 @@ AGGenInstance &AGGen::generate(bool batch_process, int batch_size, int numThrd,
struct timeval t01,t02; struct timeval t01,t02;
gettimeofday(&t01,NULL); gettimeofday(&t01,NULL);
task_zero(instance, localFrontier, mem_threshold); task_zero(instance, localFrontier, mem_threshold);
std::cout << "Finished task 0." << std::endl;
gettimeofday(&t02,NULL); gettimeofday(&t02,NULL);
total_task0+=(t02.tv_sec-t01.tv_sec)*1000.0+(t02.tv_usec-t01.tv_usec)/1000.0; total_task0+=(t02.tv_sec-t01.tv_sec)*1000.0+(t02.tv_usec-t01.tv_usec)/1000.0;
} }
@ -436,6 +442,7 @@ AGGenInstance &AGGen::generate(bool batch_process, int batch_size, int numThrd,
struct timeval t11,t12; struct timeval t11,t12;
gettimeofday(&t11,NULL); gettimeofday(&t11,NULL);
task_one(instance, current_state, exploit_list, od_map, alloc, two_alloc, reduc_factor, num_tasks, world, tcomm); task_one(instance, current_state, exploit_list, od_map, alloc, two_alloc, reduc_factor, num_tasks, world, tcomm);
std::cout << "Finished Task 1 as Node: " << world.rank() << std::endl;
gettimeofday(&t12,NULL); gettimeofday(&t12,NULL);
total_task1+=(t12.tv_sec-t11.tv_sec)*1000.0+(t12.tv_usec-t11.tv_usec)/1000.0; total_task1+=(t12.tv_sec-t11.tv_sec)*1000.0+(t12.tv_usec-t11.tv_usec)/1000.0;
} }
@ -448,6 +455,7 @@ AGGenInstance &AGGen::generate(bool batch_process, int batch_size, int numThrd,
gettimeofday(&t21,NULL); gettimeofday(&t21,NULL);
task_two(instance, alloc, two_alloc, world, localFrontier, mem_threshold,\ task_two(instance, alloc, two_alloc, world, localFrontier, mem_threshold,\
ttwo_comm, ex_groups, hash_map); ttwo_comm, ex_groups, hash_map);
std::cout << "Finished Task 2 as Node: " << world.rank() << std::endl;
//Wait for all Task 2 nodes to finish //Wait for all Task 2 nodes to finish
ttwo_comm.barrier(); ttwo_comm.barrier();
gettimeofday(&t22,NULL); gettimeofday(&t22,NULL);
@ -463,6 +471,7 @@ AGGenInstance &AGGen::generate(bool batch_process, int batch_size, int numThrd,
world.isend(w, 2, 1); world.isend(w, 2, 1);
} }
} }
std::cout << "Task 2 Finished." << std::endl;
} }
} }
else{ else{
@ -476,7 +485,7 @@ AGGenInstance &AGGen::generate(bool batch_process, int batch_size, int numThrd,
*/ */
//If we haven't been told that task 2 is finished, and if we still more facts or states to update: //If we haven't been told that task 2 is finished, and if we still more facts or states to update:
//while(!world.iprobe(1+alloc, 2) && world.iprobe(mpi::any_source, 3) && world.iprobe(mpi::any_source, 4) && world.iprobe(mpi::any_source, 5)) //while(!world.iprobe(1+alloc, 2) && world.iprobe(mpi::any_source, 3) && world.iprobe(mpi::any_source, 4) && world.iprobe(mpi::any_source, 5))
std::cout << "Node " << world.rank() << " is waiting for Task 2 completion." << std::endl;
while(!world.iprobe(send_check(world, alloc), 2) || world.iprobe(mpi::any_source, 3) || world.iprobe(mpi::any_source, 4) || world.iprobe(mpi::any_source, 5)) while(!world.iprobe(send_check(world, alloc), 2) || world.iprobe(mpi::any_source, 3) || world.iprobe(mpi::any_source, 4) || world.iprobe(mpi::any_source, 5))
{ {
@ -507,6 +516,7 @@ AGGenInstance &AGGen::generate(bool batch_process, int batch_size, int numThrd,
gettimeofday(&t31,NULL); gettimeofday(&t31,NULL);
task_three(instance, critical_state, localFrontier, mem_threshold, world,\ task_three(instance, critical_state, localFrontier, mem_threshold, world,\
two_alloc, current_state, exploit, assetGroup, hash_map); two_alloc, current_state, exploit, assetGroup, hash_map);
std::cout << "Task 3 finished." << std::endl;
gettimeofday(&t32,NULL); gettimeofday(&t32,NULL);
total_task3+=(t32.tv_sec-t31.tv_sec)*1000.0+(t32.tv_usec-t31.tv_usec)/1000.0; total_task3+=(t32.tv_sec-t31.tv_sec)*1000.0+(t32.tv_usec-t31.tv_usec)/1000.0;
} }
@ -521,6 +531,7 @@ AGGenInstance &AGGen::generate(bool batch_process, int batch_size, int numThrd,
//Task Four //Task Four
if (world.rank() == send_check(world, 2*two_alloc+1)){ if (world.rank() == send_check(world, 2*two_alloc+1)){
if(world.iprobe(0, 7) || world.iprobe(0, 8)){ if(world.iprobe(0, 7) || world.iprobe(0, 8)){
std::cout << "Node " << world.rank() << " is starting Task 4." << std::endl;
std::vector<Factbase> factbases_dump; std::vector<Factbase> factbases_dump;
std::vector<Edge> edges_dump; std::vector<Edge> edges_dump;
world.irecv(0, 7, factbases_dump); world.irecv(0, 7, factbases_dump);
@ -528,6 +539,7 @@ AGGenInstance &AGGen::generate(bool batch_process, int batch_size, int numThrd,
instance.factbases = factbases_dump; instance.factbases = factbases_dump;
instance.edges = edges_dump; instance.edges = edges_dump;
//task_four(instance); //task_four(instance);
std::cout << "Task 4 finished." << std::endl;
struct timeval t41,t42; struct timeval t41,t42;
gettimeofday(&t41,NULL); gettimeofday(&t41,NULL);
save_ag_to_db(instance, true); save_ag_to_db(instance, true);

18
src/main.cpp
View File

@ -521,17 +521,18 @@ int main(int argc, char *argv[]) {
boost::mpi::environment env(argc, argv, mt_level); boost::mpi::environment env(argc, argv, mt_level);
mt ::level provided = env.thread_level(); mt ::level provided = env.thread_level();
std::cout << "Asked the MPI environment to be created with threading level: "\
<< mt_level << std::endl;
std::cout << "MPI Environment was created with threading level: " << provided \
<< std::endl;
// std::cout << "Ensure that the MPI package has the MPI_THREAD_MULTIPLE build-time option enabled,"\ // std::cout << "Ensure that the MPI package has the MPI_THREAD_MULTIPLE build-time option enabled,"\
<< "or change the environment creation to be use MPI threading level of single." << std::endl; << "or change the environment creation to be use MPI threading level of single." << std::endl;
// exit(EXIT_FAILURE); // exit(EXIT_FAILURE);
mpi::communicator world; mpi::communicator world;
if (world.rank() == 0){
std::cout << "Asked the MPI environment to be created with threading level: "\
<< mt_level << std::endl;
std::cout << "MPI Environment was created with threading level: " << provided \
<< std::endl;
}
char hammer_host[256]; char hammer_host[256];
gethostname(hammer_host, 256); gethostname(hammer_host, 256);
@ -560,7 +561,9 @@ int main(int argc, char *argv[]) {
//std::cout<<password<<std::endl; //std::cout<<password<<std::endl;
//init_db("postgresql://" + username + ":" + password + "@" + host + ":" + port + "/" + dbName); //only to connect to the db, not query or update yet!!! //init_db("postgresql://" + username + ":" + password + "@" + host + ":" + port + "/" + dbName); //only to connect to the db, not query or update yet!!!
if(db_name != "ag_gen"){ if(db_name != "ag_gen"){
std::cout << "\nThe given database differs from that specified in the config file. Overriding config database name." << std::endl; if (world.rank() == 0){
std::cout << "\nThe given database differs from that specified in the config file. Overriding config database name." << std::endl;
}
init_db("dbname="+db_name+" user="+username+" host="+host+" port="+port+" password="+password); init_db("dbname="+db_name+" user="+username+" host="+host+" port="+port+" password="+password);
} }
else else
@ -568,7 +571,8 @@ int main(int argc, char *argv[]) {
gettimeofday(&tf2,NULL); gettimeofday(&tf2,NULL);
double tdiff2=(tf2.tv_sec-ts1.tv_sec)*1000.0+(tf2.tv_usec-ts1.tv_usec)/1000.0; double tdiff2=(tf2.tv_sec-ts1.tv_sec)*1000.0+(tf2.tv_usec-ts1.tv_usec)/1000.0;
std::cout<< "Node " << world.rank() << " finished db connection\n" << std::endl; std::cout<< "Node " << world.rank() << " finished db connection\n" << std::endl;
printf("Initialization and Connecting to DB took %lf ms for this process. \n",tdiff2); std::cout << "Initialization and Connecting to DB took " << tdiff2 << " for Process " << world.rank() << std::endl;
//printf("Initialization and Connecting to DB took %lf ms for this process. \n",tdiff2);
printf("\n"); printf("\n");
} }
else else

5
src/mpi/tasks.cpp
View File

@ -68,7 +68,7 @@ void task_one(AGGenInstance &instance, NetworkState &current_state,\
int alloc, int two_alloc, int reduc_factor, int num_tasks, boost::mpi::communicator &world,\ int alloc, int two_alloc, int reduc_factor, int num_tasks, boost::mpi::communicator &world,\
boost::mpi::communicator &tcomm){ boost::mpi::communicator &tcomm){
//std::cout << "Process rank " << world.rank() << " with " << alloc << " node(s) allocated has started Task 1." << std::endl; std::cout << "Process rank " << world.rank() << " with " << alloc << " node(s) allocated has started Task 1." << std::endl;
std::vector<std::tuple<Exploit, AssetGroup>> appl_exploits; std::vector<std::tuple<Exploit, AssetGroup>> appl_exploits;
unsigned long esize = exploit_list.size(); unsigned long esize = exploit_list.size();
@ -156,6 +156,8 @@ void task_two(AGGenInstance &instance, int alloc, int two_alloc, boost::mpi::com
std::deque<NetworkState> &localFrontier, double mem_threshold, boost::mpi::communicator &ttwo_comm,\ std::deque<NetworkState> &localFrontier, double mem_threshold, boost::mpi::communicator &ttwo_comm,\
std::vector<std::string> ex_groups, std::unordered_map<size_t, int> &hash_map){ std::vector<std::string> ex_groups, std::unordered_map<size_t, int> &hash_map){
std::cout << "Process rank " << world.rank() << " with " << two_alloc << " node(s) allocated has started Task 2." << std::endl;
NetworkState current_state; NetworkState current_state;
std::vector<std::tuple<Exploit, AssetGroup>> appl_exploits; std::vector<std::tuple<Exploit, AssetGroup>> appl_exploits;
@ -337,6 +339,7 @@ void task_three(AGGenInstance &instance, NetworkState &new_state, std::deque<Net
double mem_threshold, boost::mpi::communicator &world, int two_alloc, NetworkState &current_state,\ double mem_threshold, boost::mpi::communicator &world, int two_alloc, NetworkState &current_state,\
Exploit &exploit, AssetGroup &assetGroup, std::unordered_map<size_t, int> &hash_map){ Exploit &exploit, AssetGroup &assetGroup, std::unordered_map<size_t, int> &hash_map){
std::cout << "Started Task 3." << std::endl;
auto hash_num = new_state.get_hash(instance.facts); auto hash_num = new_state.get_hash(instance.facts);
//although local frontier is updated, the global hash is also updated to avoid testing on explored states. //although local frontier is updated, the global hash is also updated to avoid testing on explored states.