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/home/nschrick/pkg/boost/1.77.0/include -isystem /storage/home/nschrick/pkg/openmpi/4.1.2/include -isystem /home/nschrick/pkg/openmpi/4.1.2/include -std=c++14 -fopenmp -g -g -O0 -ggdb -Wall -fopenmp -pedantic -pthread -o CMakeFiles/ag_gen.dir/src/mpi/tasks.cpp.o -c /home/nschrick/ag_parallel/src/mpi/tasks.cpp", + "file": "/home/nschrick/ag_parallel/src/mpi/tasks.cpp" } ] \ No newline at end of file diff --git a/build/config.ini b/build/config.ini index 9ff73dd..c7a4d99 100755 --- a/build/config.ini +++ b/build/config.ini @@ -1,6 +1,6 @@ [database] name = ag_gen -host = 127.0.0.1 -port = 5432 +host = login +port = 5420 username = ag_gen password = 8PZQc79NUZ3FjqSB diff --git a/build/run.sh b/build/run.sh index 5524212..f3b664b 100755 --- a/build/run.sh +++ b/build/run.sh @@ -49,16 +49,24 @@ fi #./ag_gen -n ../fpga_examples/Network_5/car_network5.nm -x ../fpga_examples/Network_5/car_network5.xp -g DOTFILE.dot -t 1 -q 1 if [ "$TYPE" == "$strval1" ]; then + #Old #./ag_gen -n ../Feb_2021/generic_timeline_maintenance.nm -x ../Feb_2021/Sync/"$NUM_SERV"_Serv/sync_timeline_maintenance.xp -g DOTFILE.dot -t 1 -q 1 -p -a 0.9 - mpirun --mca btl tcp,self --mca btl_tcp_if_include "$ITFC" --mca opal_warn_on_missing_libcuda 0 ./ag_gen -n ../Oct_2021/nm_files/"$CARS"_car_timeline_maintenance.nm -x ../Oct_2021/Sync/4_Exploits/"$NUM_SERV"_Serv/sync_timeline_maintenance.xp -t 1 -q 1 -p -a 0.6 -z "$DBNAME" + #Curr + #mpirun --mca btl tcp,self --mca btl_tcp_if_include "$ITFC" --mca opal_warn_on_missing_libcuda 0 ./ag_gen -n ../Oct_2021/nm_files/"$CARS"_car_timeline_maintenance.nm -x ../Oct_2021/Sync/4_Exploits/"$NUM_SERV"_Serv/sync_timeline_maintenance.xp -t 1 -q 1 -p -a 0.6 -z "$DBNAME" + #Test + mpirun --mca btl_openib_allow_ib 1 --mca opal_warn_on_missing_libcuda 0 ./ag_gen -n ../Oct_2021/nm_files/"$CARS"_car_timeline_maintenance.nm -x ../Oct_2021/Sync/4_Exploits/"$NUM_SERV"_Serv/sync_timeline_maintenance.xp -t 1 -q 1 -p -a 0.6 -z "$DBNAME" + elif [ "$TYPE" == "$strval2" ]; then #./ag_gen -n ../Feb_2021/generic_timeline_maintenance.nm -x ../Feb_2021/Non_Sync/"$NUM_SERV"_Serv/generic_timeline_maintenance.xp -g DOTFILE.dot -t 1 -q 1 -p -a 0.9 - mpirun --mca btl tcp,self --mca btl_tcp_if_include "$ITFC" --mca opal_warn_on_missing_libcuda 0 ./ag_gen -n ../Oct_2021/nm_files/"$CARS"_car_timeline_maintenance.nm -x ../Oct_2021/Non_Sync/4_Exploits/"$NUM_SERV"_Serv/generic_timeline_maintenance.xp -t 1 -q 1 -p -a 0.6 -z "$DBNAME" + #Test + #mpirun --mca btl tcp,self --mca btl_tcp_if_include "$ITFC" --mca opal_warn_on_missing_libcuda 0 ./ag_gen -n ../Oct_2021/nm_files/"$CARS"_car_timeline_maintenance.nm -x ../Oct_2021/Non_Sync/4_Exploits/"$NUM_SERV"_Serv/generic_timeline_maintenance.xp -t 1 -q 1 -p -a 0.6 -z "$DBNAME" + + mpirun --mca btl_openib_allow_ib 1 --mca opal_warn_on_missing_libcuda 0 ./ag_gen -n ../Oct_2021/nm_files/"$CARS"_car_timeline_maintenance.nm -x ../Oct_2021/Sync/4_Exploits/"$NUM_SERV"_Serv/sync_timeline_maintenance.xp -t 1 -q 1 -p -a 0.6 -z "$DBNAME" else echo "Running default." - mpirun --mca btl tcp,self --mca btl_tcp_if_include "$ITFC" --mca opal_warn_on_missing_libcuda 0 ./ag_gen -n ../Oct_2021/nm_files/1_car_timeline_maintenance.nm -x ../Oct_2021/Sync/4_Exploits/1_Serv/sync_timeline_maintenance.xp -t 1 -q 1 -p -a 0.6 -z "$DBNAME" + mpirun --mca btl_openib_allow_ib 1 --mca opal_warn_on_missing_libcuda 0 ./ag_gen -n ../Oct_2021/nm_files/1_car_timeline_maintenance.nm -x ../Oct_2021/Sync/4_Exploits/1_Serv/sync_timeline_maintenance.xp -t 1 -q 1 -p -a 0.6 -z "$DBNAME" fi diff --git a/build/slurm_reports/job.29742.err b/build/slurm_reports/job.29742.err new file mode 100644 index 0000000..c8beb5c --- /dev/null +++ b/build/slurm_reports/job.29742.err @@ -0,0 +1,191 @@ +terminate called after throwing an instance of 'DBException' +terminate called after throwing an instance of 'DBException' + what(): Database connection failed: dbname=tmp user=ag_gen host=login port=5420 password=8PZQc79NUZ3FjqSB +could not connect to server: Connection refused + Is the server running on host "login" (10.1.100.100) and accepting + TCP/IP connections on port 5420? + + what(): Database connection failed: dbname=tmp user=ag_gen host=login port=5420 password=8PZQc79NUZ3FjqSB +could not connect to server: Connection refused + Is the server running on host "login" (10.1.100.100) and accepting + TCP/IP connections on port 5420? + +[compute03:25307] *** Process received signal *** +[compute03:25307] Signal: Aborted (6) +[compute03:25307] Signal code: (-6) +[compute03:25306] *** Process received signal *** +[compute03:25306] Signal: Aborted (6) +[compute03:25306] Signal code: (-6) +[compute03:25307] [ 0] /lib64/libpthread.so.0(+0xf7e0)[0x7f9d3a1677e0] +[compute03:25307] [ 1] terminate called after throwing an instance of 'DBException' +[compute03:25306] [ 0] /lib64/libpthread.so.0(+0xf7e0)[0x7f6f98b587e0] +[compute03:25306] [ 1] /lib64/libc.so.6(gsignal+0x35)[0x7f9d39df6495] +[compute03:25307] [ 2] /lib64/libc.so.6(gsignal+0x35)[0x7f6f987e7495] +[compute03:25306] [ 2] terminate called after throwing an instance of 'DBException' + what(): Database connection failed: dbname=tmp user=ag_gen host=login port=5420 password=8PZQc79NUZ3FjqSB +could not connect to server: Connection refused + Is the server running on host "login" (10.1.100.100) and accepting + TCP/IP connections on port 5420? + +[compute04:24809] *** Process received signal *** +/lib64/libc.so.6(abort+0x175)[0x7f9d39df7c75] +[compute03:25307] [ 3] /lib64/libc.so.6(abort+0x175)[0x7f6f987e8c75] +[compute03:25306] [ 3] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x915c2)[0x7f9d3aace5c2] +[compute03:25307] [ 4] what(): Database connection failed: dbname=tmp user=ag_gen host=login port=5420 password=8PZQc79NUZ3FjqSB +could not connect to server: Connection refused + Is the server running on host "login" (10.1.100.100) and accepting + TCP/IP connections on port 5420? + +[compute04:24810] *** Process received signal *** +[compute04:24810] Signal: Aborted (6) +[compute04:24810] Signal code: (-6) +/opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8f4a6)[0x7f9d3aacc4a6] +[compute03:25307] [ 5] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x915c2)[0x7f6f994bf5c2] +[compute03:25306] [ 4] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8f4e1)[0x7f9d3aacc4e1] +[compute03:25307] [ 6] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8f4a6)[0x7f6f994bd4a6] +[compute03:25306] [ 5] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8f723)[0x7f9d3aacc723] +[compute03:25307] [ 7] [compute04:24809] Signal: Aborted (6) +[compute04:24809] Signal code: (-6) +[compute04:24809] [ 0] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8f4e1)[0x7f6f994bd4e1] +[compute03:25306] [ 6] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8f723)[0x7f6f994bd723] +[compute03:25306] [ 7] [compute04:24810] [ 0] /lib64/libpthread.so.0(+0xf7e0)[0x7f88c631b7e0] +[compute04:24810] [ 1] /lib64/libc.so.6(gsignal+0x35)[0x7f88c5faa495] +[compute04:24810] [ 2] ./ag_gen(_ZN10Connection7connectERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x15e)[0x63cb74] +[compute03:25307] [ 8] /lib64/libpthread.so.0(+0xf7e0)[0x7f93996627e0] +[compute04:24809] [ 1] /lib64/libc.so.6(gsignal+0x35)[0x7f93992f1495] +[compute04:24809] [ 2] /lib64/libc.so.6(abort+0x175)[0x7f93992f2c75] +./ag_gen(_ZN10Connection7connectERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x15e)[0x63cb74] +[compute03:25306] [ 8] ./ag_gen(_ZN2DB7connectERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x23)[0x63d10b] +[compute03:25307] [ 9] /lib64/libc.so.6(abort+0x175)[0x7f88c5fabc75] +[compute04:24810] [ 3] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x915c2)[0x7f88c6c825c2] +[compute04:24810] [ 4] [compute04:24809] [ 3] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x915c2)[0x7f9399fc95c2] +[compute04:24809] [ 4] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8f4a6)[0x7f88c6c804a6] +[compute04:24810] [ 5] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8f4e1)[0x7f88c6c804e1] +[compute04:24810] [ 6] ./ag_gen(_ZN2DB7connectERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x23)[0x63d10b] +[compute03:25306] [ 9] ./ag_gen(_Z7init_dbNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x1d)[0x634ab5] +[compute03:25307] [10] ./ag_gen(main+0x7e8)[0x5c2d8e] +[compute03:25307] [11] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8f4a6)[0x7f9399fc74a6] +[compute04:24809] [ 5] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8f4e1)[0x7f9399fc74e1] +[compute04:24809] [ 6] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8f723)[0x7f9399fc7723] +[compute04:24809] [ 7] /lib64/libc.so.6(__libc_start_main+0xfd)[0x7f9d39de2d1d] +[compute03:25307] [12] ./ag_gen[0x5c0c49] +[compute03:25307] *** End of error message *** +/opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8f723)[0x7f88c6c80723] +[compute04:24810] [ 7] ./ag_gen(_Z7init_dbNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x1d)[0x634ab5] +[compute03:25306] [10] ./ag_gen(main+0x7e8)[0x5c2d8e] +[compute03:25306] [11] ./ag_gen(_ZN10Connection7connectERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x15e)[0x63cb74] +[compute04:24809] [ 8] /lib64/libc.so.6(__libc_start_main+0xfd)[0x7f6f987d3d1d] +[compute03:25306] [12] ./ag_gen(_ZN10Connection7connectERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x15e)[0x63cb74] +[compute04:24810] [ 8] terminate called after throwing an instance of 'DBException' +./ag_gen[0x5c0c49] +[compute03:25306] *** End of error message *** +terminate called after throwing an instance of 'DBException' +./ag_gen(_ZN2DB7connectERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x23)[0x63d10b] +[compute04:24809] [ 9] terminate called after throwing an instance of 'DBException' + what(): Database connection failed: dbname=tmp user=ag_gen host=login port=5420 password=8PZQc79NUZ3FjqSB +could not connect to server: Connection refused + Is the server running on host "login" (10.1.100.100) and accepting + TCP/IP connections on port 5420? + +terminate called after throwing an instance of 'DBException' + what(): Database connection failed: dbname=tmp user=ag_gen host=login port=5420 password=8PZQc79NUZ3FjqSB +could not connect to server: Connection refused + Is the server running on host "login" (10.1.100.100) and accepting + TCP/IP connections on port 5420? + +./ag_gen(_ZN2DB7connectERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x23)[0x63d10b] +[compute04:24810] [ 9] what(): Database connection failed: dbname=tmp user=ag_gen host=login port=5420 password=8PZQc79NUZ3FjqSB +could not connect to server: Connection refused + Is the server running on host "login" (10.1.100.100) and accepting + TCP/IP connections on port 5420? + +[compute06:24528] *** Process received signal *** +[compute06:24528] Signal: Aborted (6) +[compute06:24528] Signal code: (-6) + what(): Database connection failed: dbname=tmp user=ag_gen host=login port=5420 password=8PZQc79NUZ3FjqSB +could not connect to server: Connection refused + Is the server running on host "login" (10.1.100.100) and accepting + TCP/IP connections on port 5420? + +[compute05:24497] *** Process received signal *** +[compute05:24497] Signal: Aborted (6) +[compute05:24497] Signal code: (-6) +./ag_gen(_Z7init_dbNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x1d)[0x634ab5] +[compute04:24809] [10] [compute06:24527] *** Process received signal *** +[compute06:24527] Signal: Aborted (6) +[compute06:24527] Signal code: (-6) +[compute05:24496] *** Process received signal *** +[compute05:24496] Signal: Aborted (6) +[compute05:24496] Signal code: (-6) +./ag_gen(_Z7init_dbNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x1d)[0x634ab5] +[compute04:24810] [10] [compute06:24528] [ 0] /lib64/libpthread.so.0(+0xf7e0)[0x7f86803b07e0] +[compute06:24528] [ 1] [compute05:24497] [ 0] /lib64/libpthread.so.0(+0xf7e0)[0x7f1aef7697e0] +./ag_gen(main+0x7e8)[0x5c2d8e] +[compute04:24809] [11] /lib64/libc.so.6(__libc_start_main+0xfd)[0x7f93992ddd1d] +[compute04:24809] [12] [compute06:24527] [ 0] /lib64/libpthread.so.0(+0xf7e0)[0x7fe3588c97e0] +[compute06:24527] [ 1] [compute05:24496] [ 0] /lib64/libpthread.so.0(+0xf7e0)[0x7fba08a7e7e0] +[compute05:24496] [ 1] ./ag_gen(main+0x7e8)[0x5c2d8e] +[compute04:24810] [11] /lib64/libc.so.6(__libc_start_main+0xfd)[0x7f88c5f96d1d] +[compute04:24810] [12] /lib64/libc.so.6(gsignal+0x35)[0x7f868003f495] +[compute06:24528] [ 2] [compute05:24497] [ 1] /lib64/libc.so.6(gsignal+0x35)[0x7f1aef3f8495] +[compute05:24497] [ 2] ./ag_gen[0x5c0c49] +[compute04:24809] *** End of error message *** +/lib64/libc.so.6(gsignal+0x35)[0x7fe358558495] +[compute06:24527] [ 2] /lib64/libc.so.6(abort+0x175)[0x7fe358559c75] +[compute06:24527] [ 3] /lib64/libc.so.6(gsignal+0x35)[0x7fba0870d495] +[compute05:24496] [ 2] /lib64/libc.so.6(abort+0x175)[0x7fba0870ec75] +[compute05:24496] [ 3] ./ag_gen[0x5c0c49] +[compute04:24810] *** End of error message *** +/lib64/libc.so.6(abort+0x175)[0x7f8680040c75] +[compute06:24528] [ 3] /lib64/libc.so.6(abort+0x175)[0x7f1aef3f9c75] +[compute05:24497] [ 3] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x915c2)[0x7fe3592305c2] +[compute06:24527] [ 4] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x915c2)[0x7fba093e55c2] +[compute05:24496] [ 4] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x915c2)[0x7f8680d175c2] +[compute06:24528] [ 4] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8f4a6)[0x7f8680d154a6] +[compute06:24528] [ 5] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x915c2)[0x7f1af00d05c2] +[compute05:24497] [ 4] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8f4a6)[0x7f1af00ce4a6] +[compute05:24497] [ 5] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8f4a6)[0x7fe35922e4a6] +[compute06:24527] [ 5] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8f4a6)[0x7fba093e34a6] +[compute05:24496] [ 5] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8f4e1)[0x7fba093e34e1] +[compute05:24496] [ 6] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8f4e1)[0x7f8680d154e1] +[compute06:24528] [ 6] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8f723)[0x7f8680d15723] +[compute06:24528] [ 7] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8f4e1)[0x7f1af00ce4e1] +[compute05:24497] [ 6] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8f723)[0x7f1af00ce723] +[compute05:24497] [ 7] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8f4e1)[0x7fe35922e4e1] +[compute06:24527] [ 6] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8f723)[0x7fe35922e723] +[compute06:24527] [ 7] /opt/apps/gcc/8.2.0/lib64/libstdc++.so.6(+0x8f723)[0x7fba093e3723] +[compute05:24496] [ 7] ./ag_gen(_ZN10Connection7connectERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x15e)[0x63cb74] +[compute06:24528] [ 8] ./ag_gen(_ZN10Connection7connectERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x15e)[0x63cb74] +[compute05:24497] [ 8] ./ag_gen(_ZN10Connection7connectERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x15e)[0x63cb74] +[compute06:24527] [ 8] ./ag_gen(_ZN10Connection7connectERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x15e)[0x63cb74] +[compute05:24496] [ 8] ./ag_gen(_ZN2DB7connectERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x23)[0x63d10b] +[compute06:24528] [ 9] ./ag_gen(_ZN2DB7connectERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x23)[0x63d10b] +[compute05:24497] [ 9] ./ag_gen(_ZN2DB7connectERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x23)[0x63d10b] +[compute06:24527] [ 9] ./ag_gen(_ZN2DB7connectERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x23)[0x63d10b] +[compute05:24496] [ 9] ./ag_gen(_Z7init_dbNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x1d)[0x634ab5] +[compute06:24528] [10] ./ag_gen(_Z7init_dbNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x1d)[0x634ab5] +[compute05:24497] [10] ./ag_gen(main+0x7e8)[0x5c2d8e] +[compute06:24528] [11] ./ag_gen(main+0x7e8)[0x5c2d8e] +[compute05:24497] [11] ./ag_gen(_Z7init_dbNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x1d)[0x634ab5] +[compute06:24527] [10] ./ag_gen(_Z7init_dbNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x1d)[0x634ab5] +[compute05:24496] [10] /lib64/libc.so.6(__libc_start_main+0xfd)[0x7f868002bd1d] +[compute06:24528] [12] /lib64/libc.so.6(__libc_start_main+0xfd)[0x7f1aef3e4d1d] +[compute05:24497] [12] ./ag_gen[0x5c0c49] +[compute06:24528] *** End of error message *** +./ag_gen[0x5c0c49] +[compute05:24497] *** End of error message *** +./ag_gen(main+0x7e8)[0x5c2d8e] +[compute06:24527] [11] /lib64/libc.so.6(__libc_start_main+0xfd)[0x7fe358544d1d] +[compute06:24527] [12] ./ag_gen(main+0x7e8)[0x5c2d8e] +[compute05:24496] [11] ./ag_gen[0x5c0c49] +[compute06:24527] *** End of error message *** +/lib64/libc.so.6(__libc_start_main+0xfd)[0x7fba086f9d1d] +[compute05:24496] [12] ./ag_gen[0x5c0c49] +[compute05:24496] *** End of error message *** +-------------------------------------------------------------------------- +Primary job terminated normally, but 1 process returned +a non-zero exit code. Per user-direction, the job has been aborted. +-------------------------------------------------------------------------- +-------------------------------------------------------------------------- +mpirun noticed that process rank 0 with PID 0 on node compute03 exited on signal 6 (Aborted). +--------------------------------------------------------------------------