Switching to 4E run script, and allowing for MPI Typing in script
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163c00d071
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7a8fb705ba
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@ -19,7 +19,9 @@ TYPE=${2:-sync}
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module load graphviz
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@ -29,4 +31,4 @@ module load cmake
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"command": "/opt/apps/gcc/8.2.0/bin/g++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -I/usr/include/postgresql -I/home/nschrick/ag_parallel/src -isystem /home/nschrick/pkg/boost/1.77.0/include -isystem /storage/home/nschrick/pkg/openmpi/4.1.2/include -isystem /home/nschrick/pkg/openmpi/4.1.2/include -std=c++14 -fopenmp -g -g -O0 -ggdb -Wall -fopenmp -pedantic -pthread -o CMakeFiles/ag_gen.dir/src/util/redis_manager.cpp.o -c /home/nschrick/ag_parallel/src/util/redis_manager.cpp",
|
||||
"file": "/home/nschrick/ag_parallel/src/util/redis_manager.cpp"
|
||||
},
|
||||
{
|
||||
"directory": "/home/noah/Documents/School/Thesis Work/ag_parallel/build",
|
||||
"command": "/usr/bin/cc -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -I/usr/include/postgresql -I\"/home/noah/Documents/School/Thesis Work/ag_parallel/src\" -g -pthread -o CMakeFiles/ag_gen.dir/src/util/str_array.c.o -c \"/home/noah/Documents/School/Thesis Work/ag_parallel/src/util/str_array.c\"",
|
||||
"file": "/home/noah/Documents/School/Thesis Work/ag_parallel/src/util/str_array.c"
|
||||
"directory": "/home/nschrick/ag_parallel/build",
|
||||
"command": "/opt/apps/gcc/8.2.0/bin/gcc -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -I/usr/include/postgresql -I/home/nschrick/ag_parallel/src -isystem /home/nschrick/pkg/boost/1.77.0/include -isystem /storage/home/nschrick/pkg/openmpi/4.1.2/include -isystem /home/nschrick/pkg/openmpi/4.1.2/include -g -pthread -o CMakeFiles/ag_gen.dir/src/util/str_array.c.o -c /home/nschrick/ag_parallel/src/util/str_array.c",
|
||||
"file": "/home/nschrick/ag_parallel/src/util/str_array.c"
|
||||
},
|
||||
{
|
||||
"directory": "/home/noah/Documents/School/Thesis Work/ag_parallel/build",
|
||||
"command": "/usr/bin/cc -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -I/usr/include/postgresql -I\"/home/noah/Documents/School/Thesis Work/ag_parallel/src\" -g -pthread -o CMakeFiles/ag_gen.dir/src/util/vector.c.o -c \"/home/noah/Documents/School/Thesis Work/ag_parallel/src/util/vector.c\"",
|
||||
"file": "/home/noah/Documents/School/Thesis Work/ag_parallel/src/util/vector.c"
|
||||
"directory": "/home/nschrick/ag_parallel/build",
|
||||
"command": "/opt/apps/gcc/8.2.0/bin/gcc -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -I/usr/include/postgresql -I/home/nschrick/ag_parallel/src -isystem /home/nschrick/pkg/boost/1.77.0/include -isystem /storage/home/nschrick/pkg/openmpi/4.1.2/include -isystem /home/nschrick/pkg/openmpi/4.1.2/include -g -pthread -o CMakeFiles/ag_gen.dir/src/util/vector.c.o -c /home/nschrick/ag_parallel/src/util/vector.c",
|
||||
"file": "/home/nschrick/ag_parallel/src/util/vector.c"
|
||||
},
|
||||
{
|
||||
"directory": "/home/noah/Documents/School/Thesis Work/ag_parallel/build",
|
||||
"command": "/usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -I/usr/include/postgresql -I\"/home/noah/Documents/School/Thesis Work/ag_parallel/src\" -std=c++14 -fopenmp -DREDIS -g -g -O0 -ggdb -Wall -fopenmp -pedantic -pthread -o CMakeFiles/ag_gen.dir/src/mpi/serialize.cpp.o -c \"/home/noah/Documents/School/Thesis Work/ag_parallel/src/mpi/serialize.cpp\"",
|
||||
"file": "/home/noah/Documents/School/Thesis Work/ag_parallel/src/mpi/serialize.cpp"
|
||||
"directory": "/home/nschrick/ag_parallel/build",
|
||||
"command": "/opt/apps/gcc/8.2.0/bin/g++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -I/usr/include/postgresql -I/home/nschrick/ag_parallel/src -isystem /home/nschrick/pkg/boost/1.77.0/include -isystem /storage/home/nschrick/pkg/openmpi/4.1.2/include -isystem /home/nschrick/pkg/openmpi/4.1.2/include -std=c++14 -fopenmp -g -g -O0 -ggdb -Wall -fopenmp -pedantic -pthread -o CMakeFiles/ag_gen.dir/src/mpi/serialize.cpp.o -c /home/nschrick/ag_parallel/src/mpi/serialize.cpp",
|
||||
"file": "/home/nschrick/ag_parallel/src/mpi/serialize.cpp"
|
||||
},
|
||||
{
|
||||
"directory": "/home/noah/Documents/School/Thesis Work/ag_parallel/build",
|
||||
"command": "/usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -I/usr/include/postgresql -I\"/home/noah/Documents/School/Thesis Work/ag_parallel/src\" -std=c++14 -fopenmp -DREDIS -g -g -O0 -ggdb -Wall -fopenmp -pedantic -pthread -o CMakeFiles/ag_gen.dir/src/mpi/tasks.cpp.o -c \"/home/noah/Documents/School/Thesis Work/ag_parallel/src/mpi/tasks.cpp\"",
|
||||
"file": "/home/noah/Documents/School/Thesis Work/ag_parallel/src/mpi/tasks.cpp"
|
||||
},
|
||||
{
|
||||
"directory": "/home/noah/Documents/School/Thesis Work/ag_parallel/build",
|
||||
"command": "/usr/bin/cc -I/usr/include/postgresql -I\"/home/noah/Documents/School/Thesis Work/ag_parallel/src\" -g -o CMakeFiles/dynstr_test.dir/src/util/mem.c.o -c \"/home/noah/Documents/School/Thesis Work/ag_parallel/src/util/mem.c\"",
|
||||
"file": "/home/noah/Documents/School/Thesis Work/ag_parallel/src/util/mem.c"
|
||||
},
|
||||
{
|
||||
"directory": "/home/noah/Documents/School/Thesis Work/ag_parallel/build",
|
||||
"command": "/usr/bin/cc -I/usr/include/postgresql -I\"/home/noah/Documents/School/Thesis Work/ag_parallel/src\" -g -o CMakeFiles/dynstr_test.dir/src/tests/mem_test.c.o -c \"/home/noah/Documents/School/Thesis Work/ag_parallel/src/tests/mem_test.c\"",
|
||||
"file": "/home/noah/Documents/School/Thesis Work/ag_parallel/src/tests/mem_test.c"
|
||||
"directory": "/home/nschrick/ag_parallel/build",
|
||||
"command": "/opt/apps/gcc/8.2.0/bin/g++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -I/usr/include/postgresql -I/home/nschrick/ag_parallel/src -isystem /home/nschrick/pkg/boost/1.77.0/include -isystem /storage/home/nschrick/pkg/openmpi/4.1.2/include -isystem /home/nschrick/pkg/openmpi/4.1.2/include -std=c++14 -fopenmp -g -g -O0 -ggdb -Wall -fopenmp -pedantic -pthread -o CMakeFiles/ag_gen.dir/src/mpi/tasks.cpp.o -c /home/nschrick/ag_parallel/src/mpi/tasks.cpp",
|
||||
"file": "/home/nschrick/ag_parallel/src/mpi/tasks.cpp"
|
||||
}
|
||||
]
|
||||
67
build/run.sh
67
build/run.sh
@ -7,6 +7,7 @@ CARS=${3:-2}
|
||||
DBNAME=${4:-tmp}
|
||||
NUM_THREADS=${5:-1}
|
||||
NODES=${6:-2}
|
||||
MPI_TYPE=${7-subgraphing}
|
||||
|
||||
ITFC="eth0"
|
||||
|
||||
@ -47,31 +48,71 @@ else
|
||||
ITFC="wlp2s0"
|
||||
fi
|
||||
|
||||
#./ag_gen -n ../car_examples/generic_timeline_maintenance.nm -x ../car_examples/tmp.xp -g DOTFILE.dot -t 1 -q 1
|
||||
#./ag_gen -n ../car_examples/generic_maintenance.nm -x ../car_examples/generic_maintenance.xp -g DOTFILE.dot -t 1 -q 1
|
||||
#./ag_gen -n ../fpga_examples/Network_5/car_network5.nm -x ../fpga_examples/Network_5/car_network5.xp -g DOTFILE.dot -t 1 -q 1
|
||||
|
||||
if [ "$TYPE" == "$strval1" ]; then
|
||||
#Old
|
||||
#./ag_gen -n ../Feb_2021/generic_timeline_maintenance.nm -x ../Feb_2021/Sync/"$NUM_SERV"_Serv/sync_timeline_maintenance.xp -g DOTFILE.dot -t 1 -q 1 -p -a 0.9
|
||||
|
||||
|
||||
if [ "$(dnsdomainname)" = "hammer.esg.utulsa.edu" ]; then
|
||||
if [ "$MPI_TYPE" == subgraphing ]; then
|
||||
#4 Exploit Option
|
||||
mpiexec --mca btl_openib_allow_ib 1 --mca btl openib,self,vader --mca opal_warn_on_missing_libcuda 0 --bind-to numa --map-by numa -np "$NODES" --timeout 129600 ./ag_gen -n ../Oct_2021/nm_files/"$CARS"_car_timeline_maintenance.nm -x ../Oct_2021/Sync/4_Exploits/"$NUM_SERV"_Serv/sync_timeline_maintenance.xp -t "$NUM_THREADS" -q 1 -p -a 0.6 -z "$DBNAME" -l 200 -s
|
||||
elif [ "$MPI_TYPE" == tasking ]; then
|
||||
#4 Exploit Option
|
||||
mpiexec --mca btl_openib_allow_ib 1 --mca btl openib,self,vader --mca opal_warn_on_missing_libcuda 0 --bind-to numa --map-by numa -np "$NODES" --timeout 129600 ./ag_gen -n ../Oct_2021/nm_files/"$CARS"_car_timeline_maintenance.nm -x ../Oct_2021/Sync/4_Exploits/"$NUM_SERV"_Serv/sync_timeline_maintenance.xp -t "$NUM_THREADS" -q 1 -p -a 0.6 -z "$DBNAME" -l 200 -e
|
||||
else
|
||||
mpiexec --mca btl_openib_allow_ib 1 --mca opal_warn_on_missing_libcuda 0 --bind-to numa --map-by numa -np "$NODES" --timeout 129600 ./ag_gen -n ../Oct_2021/nm_files/"$CARS"_car_timeline_maintenance.nm -x ../Oct_2021/Sync/4_Exploits/"$NUM_SERV"_Serv/sync_timeline_maintenance.xp -t "$NUM_THREADS" -q 1 -p -a 0.6 -g DOTFILE.dot -z "$DBNAME" -l 200 -s
|
||||
fi
|
||||
else
|
||||
#Serial/OMP
|
||||
#4 Exploit Option
|
||||
mpiexec --mca btl_openib_allow_ib 1 --mca btl openib,self,vader --mca opal_warn_on_missing_libcuda 0 --bind-to numa --map-by numa -np "$NODES" --timeout 129600 ./ag_gen -n ../Oct_2021/nm_files/"$CARS"_car_timeline_maintenance.nm -x ../Oct_2021/Sync/4_Exploits/"$NUM_SERV"_Serv/sync_timeline_maintenance.xp -t "$NUM_THREADS" -q 1 -p -a 0.6 -z "$DBNAME" -l 200
|
||||
fi #END Hammer
|
||||
|
||||
#Local
|
||||
else
|
||||
if [ "$MPI_TYPE" == subgraphing ]; then
|
||||
#4 Exploit Option
|
||||
mpiexec --mca btl_openib_allow_ib 1 --mca opal_warn_on_missing_libcuda 0 --bind-to numa --map-by numa -np "$NODES" --timeout 129600 ./ag_gen -n ../Oct_2021/nm_files/"$CARS"_car_timeline_maintenance.nm -x ../Oct_2021/Sync/4_Exploits/"$NUM_SERV"_Serv/sync_timeline_maintenance.xp -t "$NUM_THREADS" -q 1 -p -a 0.6 -z "$DBNAME" -l 200 -s
|
||||
elif [ "$MPI_TYPE" == tasking ]; then
|
||||
#4 Exploit Option
|
||||
mpiexec --mca btl_openib_allow_ib 1 --mca opal_warn_on_missing_libcuda 0 --bind-to numa --map-by numa -np "$NODES" --timeout 129600 ./ag_gen -n ../Oct_2021/nm_files/"$CARS"_car_timeline_maintenance.nm -x ../Oct_2021/Sync/4_Exploits/"$NUM_SERV"_Serv/sync_timeline_maintenance.xp -t "$NUM_THREADS" -q 1 -p -a 0.6 -z "$DBNAME" -l 200 -e
|
||||
else
|
||||
#Serial/OMP
|
||||
#4 Exploit Option
|
||||
mpiexec --mca btl_openib_allow_ib 1 --mca opal_warn_on_missing_libcuda 0 --bind-to numa --map-by numa -np "$NODES" --timeout 129600 ./ag_gen -n ../Oct_2021/nm_files/"$CARS"_car_timeline_maintenance.nm -x ../Oct_2021/Sync/4_Exploits/"$NUM_SERV"_Serv/sync_timeline_maintenance.xp -t "$NUM_THREADS" -q 1 -p -a 0.6 -z "$DBNAME" -l 200
|
||||
fi #END Non-Hammer
|
||||
fi #END Sync
|
||||
|
||||
|
||||
elif [ "$TYPE" == "$strval2" ]; then
|
||||
#4 Exploit Option
|
||||
mpiexec --mca btl_openib_allow_ib 1 --mca btl openib,self,vader --mca opal_warn_on_missing_libcuda 0 --bind-to numa --map-by numa -np "$NODES" --timeout 129600 ./ag_gen -n ../Oct_2021/nm_files/"$CARS"_car_timeline_maintenance.nm -x ../Oct_2021/Non_Sync/4_Exploits/"$NUM_SERV"_Serv/generic_timeline_maintenance.xp -t "$NUM_THREADS" -q 1 -p -a 0.6 -z "$DBNAME"
|
||||
if [ "$(dnsdomainname)" = "hammer.esg.utulsa.edu" ]; then
|
||||
if [ "$MPI_TYPE" == subgraphing ]; then
|
||||
#4 Exploit Option
|
||||
mpiexec --mca btl_openib_allow_ib 1 --mca btl openib,self,vader --mca opal_warn_on_missing_libcuda 0 --bind-to numa --map-by numa -np "$NODES" --timeout 129600 ./ag_gen -n ../Oct_2021/nm_files/"$CARS"_car_timeline_maintenance.nm -x ../Oct_2021/Non_Sync/4_Exploits/"$NUM_SERV"_Serv/generic_timeline_maintenance.xp -t "$NUM_THREADS" -q 1 -p -a 0.6 -z "$DBNAME" -l 200 -s
|
||||
elif [ "$MPI_TYPE" == tasking ]; then
|
||||
#4 Exploit Option
|
||||
mpiexec --mca btl_openib_allow_ib 1 --mca btl openib,self,vader --mca opal_warn_on_missing_libcuda 0 --bind-to numa --map-by numa -np "$NODES" --timeout 129600 ./ag_gen -n ../Oct_2021/nm_files/"$CARS"_car_timeline_maintenance.nm -x ../Oct_2021/Non_Sync/4_Exploits/"$NUM_SERV"_Serv/generic_timeline_maintenance.xp -t "$NUM_THREADS" -q 1 -p -a 0.6 -z "$DBNAME" -l 200 -e
|
||||
else
|
||||
#OMP/Serial
|
||||
#4 Exploit Option
|
||||
mpiexec --mca btl_openib_allow_ib 1 --mca btl openib,self,vader --mca opal_warn_on_missing_libcuda 0 --bind-to numa --map-by numa -np "$NODES" --timeout 129600 ./ag_gen -n ../Oct_2021/nm_files/"$CARS"_car_timeline_maintenance.nm -x ../Oct_2021/Non_Sync/4_Exploits/"$NUM_SERV"_Serv/generic_timeline_maintenance.xp -t "$NUM_THREADS" -q 1 -p -a 0.6 -z "$DBNAME" -l 200
|
||||
fi #END Hammer
|
||||
|
||||
#Local
|
||||
else
|
||||
if [ "$MPI_TYPE" == subgraphing ]; then
|
||||
#4 Exploit Option
|
||||
mpiexec --mca btl_openib_allow_ib 1 --mca opal_warn_on_missing_libcuda 0 --bind-to numa --map-by numa -np "$NODES" --timeout 129600 ./ag_gen -n ../Oct_2021/nm_files/"$CARS"_car_timeline_maintenance.nm -x ../Oct_2021/Non_Sync/4_Exploits/"$NUM_SERV"_Serv/generic_timeline_maintenance.xp -t "$NUM_THREADS" -q 1 -p -a 0.6 -z "$DBNAME" -l 200 -s
|
||||
elif [ "$MPI_TYPE" == tasking ]; then
|
||||
#4 Exploit Option
|
||||
mpiexec --mca btl_openib_allow_ib 1 --mca opal_warn_on_missing_libcuda 0 --bind-to numa --map-by numa -np "$NODES" --timeout 129600 ./ag_gen -n ../Oct_2021/nm_files/"$CARS"_car_timeline_maintenance.nm -x ../Oct_2021/Non_Sync/4_Exploits/"$NUM_SERV"_Serv/generic_timeline_maintenance.xp -t "$NUM_THREADS" -q 1 -p -a 0.6 -z "$DBNAME" -l 200 -e
|
||||
else
|
||||
#OMP/Serial
|
||||
#4 Exploit Option
|
||||
mpiexec --mca btl_openib_allow_ib 1 --mca opal_warn_on_missing_libcuda 0 --bind-to numa --map-by numa -np "$NODES" --timeout 129600 ./ag_gen -n ../Oct_2021/nm_files/"$CARS"_car_timeline_maintenance.nm -x ../Oct_2021/Non_Sync/4_Exploits/"$NUM_SERV"_Serv/generic_timeline_maintenance.xp -t "$NUM_THREADS" -q 1 -p -a 0.6 -z "$DBNAME" -l 200
|
||||
fi #END Non-Hammer
|
||||
fi #END Non-Sync
|
||||
|
||||
else
|
||||
echo "Running default."
|
||||
mpiexec --mca btl_openib_allow_ib 1 --mca btl openib,self,vader --mca opal_warn_on_missing_libcuda 0 --bind-to numa --map-by numa --timeout 129600 ./ag_gen -n ../Oct_2021/nm_files/1_car_timeline_maintenance.nm -x ../Oct_2021/Sync/10_Exploits/1_Serv/sync_timeline_maintenance.xp -t "$NUM_THREADS" -q 1 -p -a 0.6 -z "$DBNAME"
|
||||
|
||||
fi
|
||||
fi #END Sync/Non-Sync/Default
|
||||
|
||||
|
||||
#Graphviz Strict graphing to avoid duplicate nodes and edges
|
||||
|
||||
24486
build/states.txt
24486
build/states.txt
File diff suppressed because it is too large
Load Diff
@ -4,9 +4,12 @@
|
||||
#folder=omp
|
||||
#nodelist=compute08
|
||||
|
||||
folder=mpi
|
||||
folder=mpitasking
|
||||
nodelist=compute01,compute04,compute07,compute10,compute11,compute12
|
||||
|
||||
#folder=mpisubgraphing
|
||||
#nodelist=compute01,compute04,compute07,compute10,compute11,compute12
|
||||
|
||||
#folder=serial
|
||||
#nodelist=compute05
|
||||
|
||||
@ -22,13 +25,13 @@ pwd=`pwd`
|
||||
#4,8,16,32 thr
|
||||
thrds=(4 8 16 32)
|
||||
|
||||
if [[ "$folder" == serial || "$folder" == serialnosync || "$folder" == mpi ]]; then
|
||||
if [[ "$folder" == serial || "$folder" == serialnosync || "$folder" == mpitasking || "$folder" == mpisubgraphing ]]; then
|
||||
thrds=(1)
|
||||
else
|
||||
thrds=(4 8 16 32)
|
||||
fi
|
||||
|
||||
if [[ "$folder" != mpi ]]; then
|
||||
if [[ "$folder" != mpisubgraphing || "$folder" != mpitasking ]]; then
|
||||
NODES=(1)
|
||||
fi
|
||||
|
||||
@ -85,7 +88,7 @@ if [[ "$SKIPSYNC" == false ]]; then
|
||||
do
|
||||
SKIP_FLAG=0
|
||||
#Dispatch the job and get the output ("Submitted batch job <jobid>
|
||||
JOB=`sbatch --nodelist="$nodelist" ag_run.sh "$i" "sync" "$cars" "$DBNAME" "$thrd" "$node"`
|
||||
JOB=`sbatch --nodelist="$nodelist" ag_run.sh "$i" "sync" "$cars" "$DBNAME" "$thrd" "$node" "tasking"`
|
||||
#Pull the jobid
|
||||
JOB=`echo "$JOB" | grep -oP '(?<=job )[^ ]*'`
|
||||
|
||||
@ -189,7 +192,7 @@ if [[ "$SKIPSYNC" == false ]]; then
|
||||
do
|
||||
SKIP_FLAG=0
|
||||
#Dispatch the job and get the output ("Submitted batch job <jobid>
|
||||
JOB=`sbatch --nodelist="$nodelist" ag_run.sh "$i" "non-sync" "$cars" "$DBNAME" "$thrd" "$node"`
|
||||
JOB=`sbatch --nodelist="$nodelist" ag_run.sh "$i" "non-sync" "$cars" "$DBNAME" "$thrd" "$node" "tasking"`
|
||||
#Pull the jobid
|
||||
JOB=`echo "$JOB" | grep -oP '(?<=job )[^ ]*'`
|
||||
|
||||
|
||||
@ -553,11 +553,11 @@ void state_merge(std::vector<Factbase> node_factbases, std::vector<Edge> node_ed
|
||||
|
||||
else{
|
||||
//Each MPI Node has its own copy of states and factbases: we need to correct it with the Root's IDs
|
||||
int reset_num = instance.factbases.size();
|
||||
if(get_num_states() > 1)
|
||||
reset_num += get_num_states()-1;
|
||||
fb.reset_curr_id(reset_num);
|
||||
fb.set_id();
|
||||
//int reset_num = instance.factbases.size();
|
||||
//if(get_num_states() > 1)
|
||||
// reset_num += get_num_states()-1;
|
||||
//fb.reset_curr_id(reset_num);
|
||||
//fb.set_id();
|
||||
}
|
||||
}
|
||||
|
||||
@ -581,4 +581,4 @@ void edge_adjustment(AGGenInstance &instance, std::unordered_map<size_t, int> &h
|
||||
ed.force_from_id(from_id);
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
Loading…
x
Reference in New Issue
Block a user