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Noah L. Schrick 2022-02-05 02:09:23 -06:00
parent 09269addca
commit 76d084d7dd
12 changed files with 3740 additions and 3138 deletions
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74
build/Makefile
View File

@ -48,19 +48,19 @@ cmake_force:
SHELL = /bin/sh SHELL = /bin/sh
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@ -68,7 +68,7 @@ CMAKE_BINARY_DIR = /home/nschrick/ag_parallel/build
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@ -761,7 +814,9 @@ help:
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@ -804,6 +859,9 @@ help:
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BIN
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1
build/build.sh
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@ -10,6 +10,5 @@ if [ "$(dnsdomainname)" = "hammer.esg.utulsa.edu" ]; then
module load postgresql module load postgresql
fi fi
make clean
cmake -DCMAKE_BUILD_TYPE=Debug ../ -DCMAKE_EXPORT_COMPILE_COMMANDS=ON -DMPICH_IGNORE_CXX_SEEK=1 cmake -DCMAKE_BUILD_TYPE=Debug ../ -DCMAKE_EXPORT_COMPILE_COMMANDS=ON -DMPICH_IGNORE_CXX_SEEK=1
make ag_gen make ag_gen

166
build/compile_commands.json
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@ -1,132 +1,142 @@
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"file": "/home/nschrick/ag_parallel/src/mpi/serialize.cpp" "file": "/home/noah/Documents/School/Thesis Work/ag_parallel/src/mpi/serialize.cpp"
}, },
{ {
"directory": "/home/nschrick/ag_parallel/build", "directory": "/home/noah/Documents/School/Thesis Work/ag_parallel/build",
"command": "/opt/apps/gcc/8.2.0/bin/g++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -I/usr/include/postgresql -I/home/nschrick/ag_parallel/src -isystem /home/nschrick/pkg/boost/1.77.0/include -isystem /storage/home/nschrick/pkg/openmpi/4.1.2/include -isystem /home/nschrick/pkg/openmpi/4.1.2/include -std=c++14 -fopenmp -g -g -O0 -ggdb -Wall -fopenmp -pedantic -pthread -o CMakeFiles/ag_gen.dir/src/mpi/tasks.cpp.o -c /home/nschrick/ag_parallel/src/mpi/tasks.cpp", "command": "/usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -I/usr/include/postgresql -I\"/home/noah/Documents/School/Thesis Work/ag_parallel/src\" -std=c++14 -fopenmp -DREDIS -g -g -O0 -ggdb -Wall -fopenmp -pedantic -pthread -o CMakeFiles/ag_gen.dir/src/mpi/tasks.cpp.o -c \"/home/noah/Documents/School/Thesis Work/ag_parallel/src/mpi/tasks.cpp\"",
"file": "/home/nschrick/ag_parallel/src/mpi/tasks.cpp" "file": "/home/noah/Documents/School/Thesis Work/ag_parallel/src/mpi/tasks.cpp"
},
{
"directory": "/home/noah/Documents/School/Thesis Work/ag_parallel/build",
"command": "/usr/bin/cc -I/usr/include/postgresql -I\"/home/noah/Documents/School/Thesis Work/ag_parallel/src\" -g -o CMakeFiles/dynstr_test.dir/src/util/mem.c.o -c \"/home/noah/Documents/School/Thesis Work/ag_parallel/src/util/mem.c\"",
"file": "/home/noah/Documents/School/Thesis Work/ag_parallel/src/util/mem.c"
},
{
"directory": "/home/noah/Documents/School/Thesis Work/ag_parallel/build",
"command": "/usr/bin/cc -I/usr/include/postgresql -I\"/home/noah/Documents/School/Thesis Work/ag_parallel/src\" -g -o CMakeFiles/dynstr_test.dir/src/tests/mem_test.c.o -c \"/home/noah/Documents/School/Thesis Work/ag_parallel/src/tests/mem_test.c\"",
"file": "/home/noah/Documents/School/Thesis Work/ag_parallel/src/tests/mem_test.c"
} }
] ]

1983
build/nm_parser.c
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120
build/nm_parser.tab.h
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@ -1,23 +1,22 @@
/* A Bison parser, made by GNU Bison 3.8.2. */
/* A Bison parser, made by GNU Bison 2.4.1. */ /* Bison interface for Yacc-like parsers in C
Copyright (C) 1984, 1989-1990, 2000-2015, 2018-2021 Free Software Foundation,
Inc.
/* Skeleton interface for Bison's Yacc-like parsers in C
Copyright (C) 1984, 1989, 1990, 2000, 2001, 2002, 2003, 2004, 2005, 2006
Free Software Foundation, Inc.
This program is free software: you can redistribute it and/or modify This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or the Free Software Foundation, either version 3 of the License, or
(at your option) any later version. (at your option) any later version.
This program is distributed in the hope that it will be useful, This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details. GNU General Public License for more details.
You should have received a copy of the GNU General Public License You should have received a copy of the GNU General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>. */ along with this program. If not, see <https://www.gnu.org/licenses/>. */
/* As a special exception, you may create a larger work that contains /* As a special exception, you may create a larger work that contains
part or all of the Bison parser skeleton and distribute that work part or all of the Bison parser skeleton and distribute that work
@ -28,53 +27,67 @@
special exception, which will cause the skeleton and the resulting special exception, which will cause the skeleton and the resulting
Bison output files to be licensed under the GNU General Public Bison output files to be licensed under the GNU General Public
License without this special exception. License without this special exception.
This special exception was added by the Free Software Foundation in This special exception was added by the Free Software Foundation in
version 2.2 of Bison. */ version 2.2 of Bison. */
/* DO NOT RELY ON FEATURES THAT ARE NOT DOCUMENTED in the manual,
especially those whose name start with YY_ or yy_. They are
private implementation details that can be changed or removed. */
/* Tokens. */ #ifndef YY_NM_HOME_NOAH_DOCUMENTS_SCHOOL_THESIS_WORK_AG_PARALLEL_BUILD_NM_PARSER_TAB_H_INCLUDED
#ifndef YYTOKENTYPE # define YY_NM_HOME_NOAH_DOCUMENTS_SCHOOL_THESIS_WORK_AG_PARALLEL_BUILD_NM_PARSER_TAB_H_INCLUDED
# define YYTOKENTYPE /* Debug traces. */
/* Put the tokens into the symbol table, so that GDB and other debuggers #ifndef YYDEBUG
know about them. */ # define YYDEBUG 0
enum yytokentype { #endif
IDENTIFIER = 258, #if YYDEBUG
INT = 259, extern int nmdebug;
FLOAT = 260,
EQ = 261,
GT = 262,
LT = 263,
GEQ = 264,
LEQ = 265,
ONEDIR = 266,
ONEDIRBACK = 267,
BIDIR = 268,
NOTONEDIR = 269,
NOTBIDIR = 270,
NETWORK = 271,
MODEL = 272,
ASSETS = 273,
COLON = 274,
FACTS = 275,
PERIOD = 276,
SEMI = 277,
QUALITY = 278,
COMMA = 279,
TOPOLOGY = 280,
WHITESPACE = 281,
TAGS = 282
};
#endif #endif
/* Token kinds. */
#ifndef YYTOKENTYPE
# define YYTOKENTYPE
enum yytokentype
{
YYEMPTY = -2,
YYEOF = 0, /* "end of file" */
YYerror = 256, /* error */
YYUNDEF = 257, /* "invalid token" */
IDENTIFIER = 258, /* IDENTIFIER */
INT = 259, /* INT */
FLOAT = 260, /* FLOAT */
EQ = 261, /* EQ */
GT = 262, /* GT */
LT = 263, /* LT */
GEQ = 264, /* GEQ */
LEQ = 265, /* LEQ */
ONEDIR = 266, /* ONEDIR */
ONEDIRBACK = 267, /* ONEDIRBACK */
BIDIR = 268, /* BIDIR */
NOTONEDIR = 269, /* NOTONEDIR */
NOTBIDIR = 270, /* NOTBIDIR */
NETWORK = 271, /* NETWORK */
MODEL = 272, /* MODEL */
ASSETS = 273, /* ASSETS */
COLON = 274, /* COLON */
FACTS = 275, /* FACTS */
PERIOD = 276, /* PERIOD */
SEMI = 277, /* SEMI */
QUALITY = 278, /* QUALITY */
COMMA = 279, /* COMMA */
TOPOLOGY = 280, /* TOPOLOGY */
WHITESPACE = 281, /* WHITESPACE */
TAGS = 282 /* TAGS */
};
typedef enum yytokentype yytoken_kind_t;
#endif
/* Value type. */
#if ! defined YYSTYPE && ! defined YYSTYPE_IS_DECLARED #if ! defined YYSTYPE && ! defined YYSTYPE_IS_DECLARED
typedef union YYSTYPE union YYSTYPE
{ {
#line 25 "/home/noah/Documents/School/Thesis Work/ag_parallel/src/parser/nm-parser/nm_parser.yy"
/* Line 1676 of yacc.c */
#line 25 "/home/nschrick/ag_parallel/src/parser/nm-parser/nm_parser.yy"
struct str_array* arr; struct str_array* arr;
struct list* lst; struct list* lst;
@ -83,16 +96,19 @@ typedef union YYSTYPE
struct fact *fct; struct fact *fct;
char* string; char* string;
#line 100 "/home/noah/Documents/School/Thesis Work/ag_parallel/build/nm_parser.tab.h"
};
/* Line 1676 of yacc.c */ typedef union YYSTYPE YYSTYPE;
#line 90 "/home/nschrick/ag_parallel/build/nm_parser.tab.h"
} YYSTYPE;
# define YYSTYPE_IS_TRIVIAL 1 # define YYSTYPE_IS_TRIVIAL 1
# define yystype YYSTYPE /* obsolescent; will be withdrawn */
# define YYSTYPE_IS_DECLARED 1 # define YYSTYPE_IS_DECLARED 1
#endif #endif
extern YYSTYPE nmlval; extern YYSTYPE nmlval;
int nmparse (struct networkmodel* nm);
#endif /* !YY_NM_HOME_NOAH_DOCUMENTS_SCHOOL_THESIS_WORK_AG_PARALLEL_BUILD_NM_PARSER_TAB_H_INCLUDED */

1041
build/nm_scanner.c
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6
build/run.sh
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@ -55,8 +55,12 @@ if [ "$TYPE" == "$strval1" ]; then
#Old #Old
#./ag_gen -n ../Feb_2021/generic_timeline_maintenance.nm -x ../Feb_2021/Sync/"$NUM_SERV"_Serv/sync_timeline_maintenance.xp -g DOTFILE.dot -t 1 -q 1 -p -a 0.9 #./ag_gen -n ../Feb_2021/generic_timeline_maintenance.nm -x ../Feb_2021/Sync/"$NUM_SERV"_Serv/sync_timeline_maintenance.xp -g DOTFILE.dot -t 1 -q 1 -p -a 0.9
mpiexec --mca btl_openib_allow_ib 1 --mca btl openib,self,vader --mca opal_warn_on_missing_libcuda 0 --bind-to numa --map-by numa -np "$NODES" --timeout 129600 ./ag_gen -n ../Oct_2021/nm_files/"$CARS"_car_timeline_maintenance.nm -x ../Oct_2021/Sync/10_Exploits/"$NUM_SERV"_Serv/sync_timeline_maintenance.xp -t "$NUM_THREADS" -q 1 -p -a 0.6 -z "$DBNAME"
if [ "$(dnsdomainname)" = "hammer.esg.utulsa.edu" ]; then
mpiexec --mca btl_openib_allow_ib 1 --mca btl openib,self,vader --mca opal_warn_on_missing_libcuda 0 --bind-to numa --map-by numa -np "$NODES" --timeout 129600 ./ag_gen -n ../Oct_2021/nm_files/"$CARS"_car_timeline_maintenance.nm -x ../Oct_2021/Sync/10_Exploits/"$NUM_SERV"_Serv/sync_timeline_maintenance.xp -t "$NUM_THREADS" -q 1 -p -a 0.6 -z "$DBNAME"
else
mpiexec --mca btl_openib_allow_ib 1 --mca opal_warn_on_missing_libcuda 0 --bind-to numa --map-by numa -np "$NODES" --timeout 129600 ./ag_gen -n ../Oct_2021/nm_files/"$CARS"_car_timeline_maintenance.nm -x ../Oct_2021/Sync/4_Exploits/"$NUM_SERV"_Serv/sync_timeline_maintenance.xp -t "$NUM_THREADS" -q 1 -p -a 0.6 -z "$DBNAME"
fi
# 4 Exploit # 4 Exploit
#mpiexec -np "$NODES" --bind-to numa --map-by numa ./ag_gen -n ../Oct_2021/nm_files/"$CARS"_car_timeline_maintenance.nm -x ../Oct_2021/Sync/4_Exploits/"$NUM_SERV"_Serv/sync_timeline_maintenance.xp -t 1 -q 1 -p -a 0.6 -z "$DBNAME" #mpiexec -np "$NODES" --bind-to numa --map-by numa ./ag_gen -n ../Oct_2021/nm_files/"$CARS"_car_timeline_maintenance.nm -x ../Oct_2021/Sync/4_Exploits/"$NUM_SERV"_Serv/sync_timeline_maintenance.xp -t 1 -q 1 -p -a 0.6 -z "$DBNAME"

2183
build/xp_parser.c
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140
build/xp_parser.tab.h
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@ -1,23 +1,22 @@
/* A Bison parser, made by GNU Bison 3.8.2. */
/* A Bison parser, made by GNU Bison 2.4.1. */ /* Bison interface for Yacc-like parsers in C
Copyright (C) 1984, 1989-1990, 2000-2015, 2018-2021 Free Software Foundation,
Inc.
/* Skeleton interface for Bison's Yacc-like parsers in C
Copyright (C) 1984, 1989, 1990, 2000, 2001, 2002, 2003, 2004, 2005, 2006
Free Software Foundation, Inc.
This program is free software: you can redistribute it and/or modify This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or the Free Software Foundation, either version 3 of the License, or
(at your option) any later version. (at your option) any later version.
This program is distributed in the hope that it will be useful, This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details. GNU General Public License for more details.
You should have received a copy of the GNU General Public License You should have received a copy of the GNU General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>. */ along with this program. If not, see <https://www.gnu.org/licenses/>. */
/* As a special exception, you may create a larger work that contains /* As a special exception, you may create a larger work that contains
part or all of the Bison parser skeleton and distribute that work part or all of the Bison parser skeleton and distribute that work
@ -28,63 +27,77 @@
special exception, which will cause the skeleton and the resulting special exception, which will cause the skeleton and the resulting
Bison output files to be licensed under the GNU General Public Bison output files to be licensed under the GNU General Public
License without this special exception. License without this special exception.
This special exception was added by the Free Software Foundation in This special exception was added by the Free Software Foundation in
version 2.2 of Bison. */ version 2.2 of Bison. */
/* DO NOT RELY ON FEATURES THAT ARE NOT DOCUMENTED in the manual,
especially those whose name start with YY_ or yy_. They are
private implementation details that can be changed or removed. */
/* Tokens. */ #ifndef YY_XP_HOME_NOAH_DOCUMENTS_SCHOOL_THESIS_WORK_AG_PARALLEL_BUILD_XP_PARSER_TAB_H_INCLUDED
#ifndef YYTOKENTYPE # define YY_XP_HOME_NOAH_DOCUMENTS_SCHOOL_THESIS_WORK_AG_PARALLEL_BUILD_XP_PARSER_TAB_H_INCLUDED
# define YYTOKENTYPE /* Debug traces. */
/* Put the tokens into the symbol table, so that GDB and other debuggers #ifndef YYDEBUG
know about them. */ # define YYDEBUG 0
enum yytokentype { #endif
IDENTIFIER = 258, #if YYDEBUG
INT = 259, extern int xpdebug;
FLOAT = 260,
GROUP = 261,
EQ = 262,
NEQ = 263,
GT = 264,
LT = 265,
GEQ = 266,
LEQ = 267,
PLUSEQ = 268,
SUBEQ = 269,
ONEDIR = 270,
ONEDIRBACK = 271,
BIDIR = 272,
NOTONEDIR = 273,
NOTBIDIR = 274,
ADD = 275,
INSERT = 276,
UPDATE = 277,
DELETE = 278,
REMOVE = 279,
EXPLOIT = 280,
PRECONDITIONS = 281,
POSTCONDITIONS = 282,
COLON = 283,
FACTS = 284,
PERIOD = 285,
SEMI = 286,
QUALITY = 287,
COMMA = 288,
TOPOLOGY = 289,
WHITESPACE = 290,
LPAREN = 291,
RPAREN = 292
};
#endif #endif
/* Token kinds. */
#ifndef YYTOKENTYPE
# define YYTOKENTYPE
enum yytokentype
{
YYEMPTY = -2,
YYEOF = 0, /* "end of file" */
YYerror = 256, /* error */
YYUNDEF = 257, /* "invalid token" */
IDENTIFIER = 258, /* IDENTIFIER */
INT = 259, /* INT */
FLOAT = 260, /* FLOAT */
GROUP = 261, /* GROUP */
EQ = 262, /* EQ */
NEQ = 263, /* NEQ */
GT = 264, /* GT */
LT = 265, /* LT */
GEQ = 266, /* GEQ */
LEQ = 267, /* LEQ */
PLUSEQ = 268, /* PLUSEQ */
SUBEQ = 269, /* SUBEQ */
ONEDIR = 270, /* ONEDIR */
ONEDIRBACK = 271, /* ONEDIRBACK */
BIDIR = 272, /* BIDIR */
NOTONEDIR = 273, /* NOTONEDIR */
NOTBIDIR = 274, /* NOTBIDIR */
ADD = 275, /* ADD */
INSERT = 276, /* INSERT */
UPDATE = 277, /* UPDATE */
DELETE = 278, /* DELETE */
REMOVE = 279, /* REMOVE */
EXPLOIT = 280, /* EXPLOIT */
PRECONDITIONS = 281, /* PRECONDITIONS */
POSTCONDITIONS = 282, /* POSTCONDITIONS */
COLON = 283, /* COLON */
FACTS = 284, /* FACTS */
PERIOD = 285, /* PERIOD */
SEMI = 286, /* SEMI */
QUALITY = 287, /* QUALITY */
COMMA = 288, /* COMMA */
TOPOLOGY = 289, /* TOPOLOGY */
WHITESPACE = 290, /* WHITESPACE */
LPAREN = 291, /* LPAREN */
RPAREN = 292 /* RPAREN */
};
typedef enum yytokentype yytoken_kind_t;
#endif
/* Value type. */
#if ! defined YYSTYPE && ! defined YYSTYPE_IS_DECLARED #if ! defined YYSTYPE && ! defined YYSTYPE_IS_DECLARED
typedef union YYSTYPE union YYSTYPE
{ {
#line 21 "/home/noah/Documents/School/Thesis Work/ag_parallel/src/parser/xp-parser/xp_parser.yy"
/* Line 1676 of yacc.c */
#line 21 "/home/nschrick/ag_parallel/src/parser/xp-parser/xp_parser.yy"
struct str_array *arr; struct str_array *arr;
struct list *list; struct list *list;
@ -94,16 +107,19 @@ typedef union YYSTYPE
struct fact *fct; struct fact *fct;
char *string; char *string;
#line 111 "/home/noah/Documents/School/Thesis Work/ag_parallel/build/xp_parser.tab.h"
};
/* Line 1676 of yacc.c */ typedef union YYSTYPE YYSTYPE;
#line 101 "/home/nschrick/ag_parallel/build/xp_parser.tab.h"
} YYSTYPE;
# define YYSTYPE_IS_TRIVIAL 1 # define YYSTYPE_IS_TRIVIAL 1
# define yystype YYSTYPE /* obsolescent; will be withdrawn */
# define YYSTYPE_IS_DECLARED 1 # define YYSTYPE_IS_DECLARED 1
#endif #endif
extern YYSTYPE xplval; extern YYSTYPE xplval;
int xpparse (struct list *xplist);
#endif /* !YY_XP_HOME_NOAH_DOCUMENTS_SCHOOL_THESIS_WORK_AG_PARALLEL_BUILD_XP_PARSER_TAB_H_INCLUDED */

1104
build/xp_scanner.c
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60
src/ag_gen/ag_gen.cpp
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@ -359,6 +359,7 @@ AGGenInstance &AGGen::generate(bool batch_process, int batch_size, int numThrd,
int mpi_exit = 0; int mpi_exit = 0;
double f_alpha = 0.0; double f_alpha = 0.0;
int zero_queue = 0;
auto tot_sys_mem = getTotalSystemMemory(); auto tot_sys_mem = getTotalSystemMemory();
std::deque<NetworkState> localFrontier; std::deque<NetworkState> localFrontier;
localFrontier.emplace_front(frontier[k]); localFrontier.emplace_front(frontier[k]);
@ -397,20 +398,15 @@ AGGenInstance &AGGen::generate(bool batch_process, int batch_size, int numThrd,
ttwo_comm = world.split(world.rank() >= send_check(world, alloc) && world.rank() <= (alloc+two_alloc)); ttwo_comm = world.split(world.rank() >= send_check(world, alloc) && world.rank() <= (alloc+two_alloc));
//std::cout << "TCOMM SIZE: " << tcomm.size() << std::endl; //std::cout << "TCOMM SIZE: " << tcomm.size() << std::endl;
//std::cout << "TTWO_COMM SIZE: " << ttwo_comm.size() << std::endl; //std::cout << "TTWO_COMM SIZE: " << ttwo_comm.size() << std::endl;
while (!localFrontier.empty() || !unex_empty() || world.rank() > 0){//while starts while (!localFrontier.empty() || !unex_empty() || world.iprobe(mpi::any_source, 5) || world.rank() > 0 || (world.rank() ==0 && zero_queue > 0)){//while starts
//Node 0 needs to tell other nodes to continue if (world.rank() != 0) {
if(world.rank() == 0){
int dummy = 1;
for (int w = 1; w < world.size(); w++){
mpi::request dum_req = world.isend(w, 14, dummy);
dum_req.wait();
}
}
else {
//If we don't have the go-ahead, check for the Finalize message. //If we don't have the go-ahead, check for the Finalize message.
//std::cout << "Node " << world.rank() << " is waiting for the go-ahead or finalize message." << std::endl; //std::cout << "Node " << world.rank() << " is waiting for the go-ahead or finalize message." << std::endl;
if(!world.iprobe(0, 14)){
//Let Node 0 we're waiting
world.isend(0, 12, 1);
}
while(!world.iprobe(0, 14)){ while(!world.iprobe(0, 14)){
if(world.iprobe(0, 15)){ if(world.iprobe(0, 15)){
mpi_exit = 1; mpi_exit = 1;
@ -427,11 +423,11 @@ AGGenInstance &AGGen::generate(bool batch_process, int batch_size, int numThrd,
//We need to refill the localFrontier with states from the database if it's empty //We need to refill the localFrontier with states from the database if it's empty
//TODO: Investigate if it's faster to read from DB directly into Node 0 //TODO: Investigate if it's faster to read from DB directly into Node 0
//Or if faster to have worker node read from DB, then comm to Node 0 //Or if faster to have worker node read from DB, then comm to Node 0
if(localFrontier.empty() && world.rank() == 0) { if(localFrontier.empty() && world.rank() == 0 && !world.iprobe(mpi::any_source, 5) && zero_queue == 0) {
struct timeval t01,t02; struct timeval t01,t02;
gettimeofday(&t01,NULL); gettimeofday(&t01,NULL);
task_zero(instance, localFrontier, mem_threshold); task_zero(instance, localFrontier, mem_threshold);
std::cout << "Finished task 0." << std::endl; //std::cout << "Finished task 0." << std::endl;
gettimeofday(&t02,NULL); gettimeofday(&t02,NULL);
total_task0+=(t02.tv_sec-t01.tv_sec)*1000.0+(t02.tv_usec-t01.tv_usec)/1000.0; total_task0+=(t02.tv_sec-t01.tv_sec)*1000.0+(t02.tv_usec-t01.tv_usec)/1000.0;
} }
@ -439,12 +435,23 @@ AGGenInstance &AGGen::generate(bool batch_process, int batch_size, int numThrd,
//Task 0 to Task 1 Communication //Task 0 to Task 1 Communication
if(world.rank() == 0) if(world.rank() == 0)
{ {
auto current_state = localFrontier.back(); //Send at most 50 states at one time to Task 1, assuming we don't have more state data to add
localFrontier.pop_back(); //if (!world.iprobe(mpi::any_source, 5)){
for(int l=0; l < alloc; l++){ for (int f = 0; f < std::min(50, (int)localFrontier.size()); f++){
mpi::request cs_req = world.isend(send_check(world, l), 20, current_state); auto current_state = localFrontier.back();
cs_req.wait(); localFrontier.pop_back();
} for(int l=0; l < alloc; l++){
mpi::request cs_req = world.isend(send_check(world, l), 20, current_state);
cs_req.wait();
}
//Node 0 needs to tell other nodes to continue the same number of times
int dummy = 1;
for (int w = 1; w < world.size(); w++){
mpi::request dum_req = world.isend(w, 14, dummy);
dum_req.wait();
}
zero_queue++;
}
} }
//Execute Task 1 //Execute Task 1
@ -498,7 +505,7 @@ AGGenInstance &AGGen::generate(bool batch_process, int batch_size, int numThrd,
//2 Node Edge case //2 Node Edge case
if(world.size() == 2){ if(world.size() == 2){
mpi::request tdone_req = world.isend(1, 2, 1); mpi::request tdone_req = world.isend(1, 2, 1);
tdone_req.wait(); tdone_req.wait();
//std::cout << "Node " << world.rank() << " sent finished message." << std::endl; //std::cout << "Node " << world.rank() << " sent finished message." << std::endl;
break; break;
} }
@ -506,7 +513,7 @@ AGGenInstance &AGGen::generate(bool batch_process, int batch_size, int numThrd,
else if(w < world.rank() || w > alloc+two_alloc) else if(w < world.rank() || w > alloc+two_alloc)
{ {
mpi::request tdone_req = world.isend(w, 2, 1); mpi::request tdone_req = world.isend(w, 2, 1);
tdone_req.wait(); tdone_req.wait();
} }
} }
@ -542,7 +549,7 @@ AGGenInstance &AGGen::generate(bool batch_process, int batch_size, int numThrd,
world.recv(mpi::any_source, 2, finished_signal); world.recv(mpi::any_source, 2, finished_signal);
//std::cout << "Receive message complete." << std::endl; //std::cout << "Receive message complete." << std::endl;
} }
} }
//If we get a new fact and new state, update //If we get a new fact and new state, update
if(world.iprobe(mpi::any_source, 3) && world.iprobe(mpi::any_source, 4)){ if(world.iprobe(mpi::any_source, 3) && world.iprobe(mpi::any_source, 4)){
@ -616,7 +623,7 @@ AGGenInstance &AGGen::generate(bool batch_process, int batch_size, int numThrd,
auto rem_state = localFrontier.front(); auto rem_state = localFrontier.front();
localFrontier.pop_front(); localFrontier.pop_front();
mpi::request rem_req = world.isend(send_check(world, alloc+two_alloc+1), 50, rem_state); mpi::request rem_req = world.isend(send_check(world, alloc+two_alloc+1), 50, rem_state);
rem_req.wait(); rem_req.wait();
} }
if (!localFrontier.empty()) if (!localFrontier.empty())
f_alpha = (static_cast<double>(localFrontier.size()) * (localFrontier.back().get_size()))/tot_sys_mem; f_alpha = (static_cast<double>(localFrontier.size()) * (localFrontier.back().get_size()))/tot_sys_mem;
@ -634,14 +641,17 @@ AGGenInstance &AGGen::generate(bool batch_process, int batch_size, int numThrd,
} }
} }
if(world.rank() == 0)
zero_queue--;
//std::cout << "Node " << world.rank() << " moving to next iter" << std::endl; //std::cout << "Node " << world.rank() << " moving to next iter" << std::endl;
} //while ends } //while ends
if(world.rank() == 0){ if(world.rank() == 0){
for (int w = 1; w < world.size(); w++){ for (int w = 1; w < world.size(); w++){
mpi::request proc_req = world.isend(w, 15, 1); mpi::request proc_req = world.isend(w, 15, 1);
proc_req.wait(); proc_req.wait();
} }
} }
if (mpi_exit == 1){ if (mpi_exit == 1){