Subgraphing with BCL
This commit is contained in:
parent
8b8c75db27
commit
75048ca849
@ -13,7 +13,11 @@ set_source_files_properties(
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)
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# Common compiler options among built types
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set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -std=c++14")
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set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -std=c++17")
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set(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} -Wl,--allow-multiple-definition")
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set(CMAKE_CXX_STANDARD 17)
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set(CMAKE_CXX_STANDARD_REQUIRED ON)
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set(CMAKE_CXX_EXTENSIONS OFF)
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# Specific compiler options for Debug or Release builds
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set(CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} -g -O0 -ggdb -Wall -fopenmp -pedantic")
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@ -82,7 +86,15 @@ endif(DOXYGEN_FOUND)
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include_directories("${CMAKE_SOURCE_DIR}/src/")
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file(GLOB ag_gen_src "${CMAKE_SOURCE_DIR}/src/ag_gen/*.cpp")
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### BCL
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set(bcl_DIR ${CMAKE_SOURCE_DIR}/src/bcl/cmake)
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find_package(bcl REQUIRED)
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add_library(bcl INTERFACE)
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include_directories(${bcl_LOC} INTERFACE)
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###
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file(GLOB_RECURSE ag_gen_src "${CMAKE_SOURCE_DIR}/src/ag_gen/*.cpp")
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file(GLOB utils_src "${CMAKE_SOURCE_DIR}/src/util/*.c" "${CMAKE_SOURCE_DIR}/src/util/*.cpp")
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file(GLOB mpi_src "${CMAKE_SOURCE_DIR}/src/mpi/*.c" "${CMAKE_SOURCE_DIR}/src/mpi/*.cpp")
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@ -130,9 +142,9 @@ ADD_FLEX_BISON_DEPENDENCY(xp_scanner xp_parser)
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####################
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add_executable(ag_gen "${CMAKE_SOURCE_DIR}/src/main.cpp"
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${FLEX_nm_scanner_OUTPUTS} ${BISON_nm_parser_OUTPUTS}
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${FLEX_nm_scanner_OUTPUTS} ${BISON_nm_parser_OUTPUTS}
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${FLEX_xp_scanner_OUTPUTS} ${BISON_xp_parser_OUTPUTS}
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${ag_gen_src} ${utils_src} ${mpi_src})
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${ag_gen_src} ${utils_src} ${mpi_src})
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target_link_libraries(ag_gen ${PostgreSQL_LIBRARIES} Boost::serialization Boost::mpi ${MPI_CXX_LIBRARIES})
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#add_executable(decode "${CMAKE_SOURCE_DIR}/src/tools/decode.cpp"
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BIN
build/ag_gen
BIN
build/ag_gen
Binary file not shown.
@ -1,142 +1,142 @@
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"command": "/usr/bin/cc -I/usr/include/postgresql -I\"/home/noah/Documents/School/Thesis Work/ag_parallel/src\" -I\"/home/noah/Documents/School/Thesis Work/ag_parallel/src/bcl/cmake/..\" -I\"/home/noah/Documents/School/Thesis Work/ag_parallel/INTERFACE\" -g -o CMakeFiles/dynstr_test.dir/src/tests/mem_test.c.o -c \"/home/noah/Documents/School/Thesis Work/ag_parallel/src/tests/mem_test.c\"",
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}
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]
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@ -7,9 +7,9 @@ CARS=${3:-2}
|
||||
DBNAME=${4:-tmp}
|
||||
NUM_THREADS=${5:-1}
|
||||
NODES=${6:-2}
|
||||
#MPI_TYPE=${7-subgraphing}
|
||||
MPI_TYPE=${7-subgraphing}
|
||||
#MPI_TYPE=${7:-serial}
|
||||
MPI_TYPE=${7:-testing}
|
||||
#MPI_TYPE=${7:-testing}
|
||||
ESIZE=${8:-6}
|
||||
|
||||
ITFC="eth0"
|
||||
|
||||
22759
build/states.txt
22759
build/states.txt
File diff suppressed because it is too large
Load Diff
@ -40,7 +40,6 @@
|
||||
#include <boost/mpi/communicator.hpp>
|
||||
#include <boost/mpi/collectives.hpp>
|
||||
|
||||
|
||||
#include <boost/serialization/is_bitwise_serializable.hpp>
|
||||
#include <boost/range/irange.hpp>
|
||||
|
||||
@ -1043,6 +1042,11 @@ int initQSize, double mem_threshold, mpi::communicator &world, int state_limit)
|
||||
{
|
||||
//Init all Nodes with these variables
|
||||
std::vector<Exploit> exploit_list = instance.exploits;
|
||||
//Distributed Hash maps for factbase hashes and explored hashes
|
||||
//NOTE: At this time, BCL does not support realloc or resizing its containers. This should ideally be changed once support is added.
|
||||
int bclhash_size = 450;
|
||||
BCL::HashMap<size_t, int> BCLmap(bclhash_size);
|
||||
BCL::HashMap<size_t, int> BCLexpl(bclhash_size);
|
||||
|
||||
//Create a vector that contains all the groups of exploits to be fired synchonously
|
||||
std::vector<std::string> ex_groups;
|
||||
@ -1183,6 +1187,8 @@ int initQSize, double mem_threshold, mpi::communicator &world, int state_limit)
|
||||
auto current_state = localFrontier.front();
|
||||
auto current_hash = current_state.get_hash(instance.facts);
|
||||
localFrontier.pop_front();
|
||||
if (BCLexpl.find(current_hash) != BCLexpl.end())
|
||||
continue;
|
||||
std::vector<std::tuple<Exploit, AssetGroup>> appl_exploits;
|
||||
for (size_t i = 0; i < esize; i++) {//for loop for applicable exploits starts
|
||||
auto e = exploit_list.at(i);
|
||||
@ -1335,11 +1341,14 @@ int initQSize, double mem_threshold, mpi::communicator &world, int state_limit)
|
||||
|
||||
#pragma omp critical
|
||||
//although local frontier is updated, the global hash is also updated to avoid testing on explored states.
|
||||
if (hash_map.find(hash_num) == hash_map.end()) {
|
||||
new_state.set_id();
|
||||
//if (hash_map.find(hash_num) == hash_map.end()) {
|
||||
if (BCLmap.find(hash_num) == BCLmap.end()) {
|
||||
//new_state.set_id();
|
||||
new_state.force_set_id(BCLmap.capacity());
|
||||
instance.factbases.push_back(new_state.get_factbase());
|
||||
hash_map.insert(std::make_pair(new_state.get_hash(instance.facts), new_state.get_id()));
|
||||
|
||||
//hash_map.insert(std::make_pair(new_state.get_hash(instance.facts), new_state.get_id()));
|
||||
BCLmap[hash_num] = new_state.get_id();
|
||||
|
||||
localFrontier.emplace_front(new_state);
|
||||
//Edge ed(current_state.get_id(), new_state.get_id(), exploit, assetGroup);
|
||||
Edge ed(current_hash, hash_num, exploit, assetGroup);
|
||||
@ -1354,6 +1363,7 @@ int initQSize, double mem_threshold, mpi::communicator &world, int state_limit)
|
||||
ed.set_id();
|
||||
instance.edges.push_back(ed);
|
||||
}
|
||||
BCLexpl[current_hash] = BCLexpl.capacity();
|
||||
} //sync fire if
|
||||
else
|
||||
continue;
|
||||
@ -1486,7 +1496,7 @@ int initQSize, double mem_threshold, mpi::communicator &world, int state_limit)
|
||||
std::unordered_set<size_t> tmp_expl;
|
||||
std::vector<std::tuple<NetworkState, size_t>> insertFrontier;
|
||||
|
||||
|
||||
/*
|
||||
//Maintain a list of explored states
|
||||
for (Factbase fb : node_factbases[w]){
|
||||
auto fb_hash = fb.hash(instance.facts);
|
||||
@ -1502,12 +1512,14 @@ int initQSize, double mem_threshold, mpi::communicator &world, int state_limit)
|
||||
tmp_expl.erase(ns_hash);
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
|
||||
//Add our tmp_expl to our front_expl
|
||||
for (auto tmp_hash : tmp_expl){
|
||||
front_expl.insert(tmp_hash);
|
||||
}
|
||||
|
||||
*/
|
||||
localFrontier.insert(std::end(localFrontier), std::begin(nodeFrontier), std::end(nodeFrontier));
|
||||
deque_marker[w] = (int)(localFrontier.size()-1);
|
||||
}
|
||||
|
||||
|
||||
@ -39,6 +39,11 @@
|
||||
|
||||
#include <boost/serialization/is_bitwise_serializable.hpp>
|
||||
|
||||
#include <bcl/bcl.hpp>
|
||||
#include <bcl/containers/HashMap.hpp>
|
||||
#include <bcl/containers/FastQueue.hpp>
|
||||
#include <bcl/containers/Array.hpp>
|
||||
|
||||
namespace mpi = boost::mpi;
|
||||
|
||||
using FactbaseItems =
|
||||
|
||||
1
src/bcl
Submodule
1
src/bcl
Submodule
@ -0,0 +1 @@
|
||||
Subproject commit a1df887318f0ecda25dfdca5f609b65873475e37
|
||||
11
src/main.cpp
11
src/main.cpp
@ -39,6 +39,7 @@
|
||||
#include "util/mem.h"
|
||||
#include "mpi/serialize.h"
|
||||
|
||||
|
||||
#ifdef REDIS
|
||||
#include "util/redis_manager.h"
|
||||
#endif // REDIS
|
||||
@ -407,6 +408,12 @@ void print_usage() {
|
||||
std::cout << "\t-r\tUse redis for generation" << std::endl;
|
||||
std::cout << "\t-h\tThis help menu." << std::endl;
|
||||
std::cout << "\t-p\tUse PostgreSQL" << std::endl;
|
||||
std::cout << "\t-e\tUse MPI Tasking" << std::endl;
|
||||
std::cout << "\t-s\tUse MPI Subgraphing" << std::endl;
|
||||
std::cout << "\t-l\tDepth Limit param for MPI Subgraphing" << std::endl;
|
||||
std::cout << "\t-a\tDecimal value for specifiying maximum amount of system memory to use" << std::endl;
|
||||
std::cout << "\t-m\tNumber of MPI Nodes to use" << std::endl;
|
||||
std::cout << "\t-z\tDatabase name for overriding config.ini file" << std::endl;
|
||||
}
|
||||
|
||||
inline bool file_exists(const std::string &name) {
|
||||
@ -559,8 +566,10 @@ int main(int argc, char *argv[]) {
|
||||
char hammer_host[256];
|
||||
gethostname(hammer_host, 256);
|
||||
|
||||
BCL::init();
|
||||
|
||||
std::cout << "\nHello from process " << world.rank() << " of " << world.size()
|
||||
<< " running on " << hammer_host << std::endl;
|
||||
<< " running on " << hammer_host << " with a BCL Rank of " << BCL::rank() << std::endl;
|
||||
|
||||
std::cout << "Finished init for process " << world.rank() << std::endl;
|
||||
|
||||
|
||||
Loading…
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Reference in New Issue
Block a user