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hammer 2022-02-05 00:22:30 -06:00
parent 19762e4090
commit 34581517c6
12 changed files with 3114 additions and 3706 deletions
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74
build/Makefile
View File

@ -48,19 +48,19 @@ cmake_force:
SHELL = /bin/sh SHELL = /bin/sh
# The CMake executable. # The CMake executable.
CMAKE_COMMAND = /usr/bin/cmake CMAKE_COMMAND = /storage/home/nschrick/pkg/cmake/3.22.0/bin/cmake
# The command to remove a file. # The command to remove a file.
RM = /usr/bin/cmake -E rm -f RM = /storage/home/nschrick/pkg/cmake/3.22.0/bin/cmake -E rm -f
# Escaping for special characters. # Escaping for special characters.
EQUALS = = EQUALS = =
# The top-level source directory on which CMake was run. # The top-level source directory on which CMake was run.
CMAKE_SOURCE_DIR = "/home/noah/Documents/School/Thesis Work/ag_parallel" CMAKE_SOURCE_DIR = /home/nschrick/ag_parallel
# The top-level build directory on which CMake was run. # The top-level build directory on which CMake was run.
CMAKE_BINARY_DIR = "/home/noah/Documents/School/Thesis Work/ag_parallel/build" CMAKE_BINARY_DIR = /home/nschrick/ag_parallel/build
#============================================================================= #=============================================================================
# Targets provided globally by CMake. # Targets provided globally by CMake.
@ -68,7 +68,7 @@ CMAKE_BINARY_DIR = "/home/noah/Documents/School/Thesis Work/ag_parallel/build"
# Special rule for the target edit_cache # Special rule for the target edit_cache
edit_cache: edit_cache:
@$(CMAKE_COMMAND) -E cmake_echo_color --switch=$(COLOR) --cyan "Running CMake cache editor..." @$(CMAKE_COMMAND) -E cmake_echo_color --switch=$(COLOR) --cyan "Running CMake cache editor..."
/usr/bin/ccmake -S$(CMAKE_SOURCE_DIR) -B$(CMAKE_BINARY_DIR) /storage/home/nschrick/pkg/cmake/3.22.0/bin/ccmake -S$(CMAKE_SOURCE_DIR) -B$(CMAKE_BINARY_DIR)
.PHONY : edit_cache .PHONY : edit_cache
# Special rule for the target edit_cache # Special rule for the target edit_cache
@ -78,7 +78,7 @@ edit_cache/fast: edit_cache
# Special rule for the target rebuild_cache # Special rule for the target rebuild_cache
rebuild_cache: rebuild_cache:
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/usr/bin/cmake --regenerate-during-build -S$(CMAKE_SOURCE_DIR) -B$(CMAKE_BINARY_DIR) /storage/home/nschrick/pkg/cmake/3.22.0/bin/cmake --regenerate-during-build -S$(CMAKE_SOURCE_DIR) -B$(CMAKE_BINARY_DIR)
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@ -87,9 +87,9 @@ rebuild_cache/fast: rebuild_cache
# The main all target # The main all target
all: cmake_check_build_system all: cmake_check_build_system
$(CMAKE_COMMAND) -E cmake_progress_start "/home/noah/Documents/School/Thesis Work/ag_parallel/build/CMakeFiles" "/home/noah/Documents/School/Thesis Work/ag_parallel/build//CMakeFiles/progress.marks" $(CMAKE_COMMAND) -E cmake_progress_start /home/nschrick/ag_parallel/build/CMakeFiles /home/nschrick/ag_parallel/build//CMakeFiles/progress.marks
$(MAKE) $(MAKESILENT) -f CMakeFiles/Makefile2 all $(MAKE) $(MAKESILENT) -f CMakeFiles/Makefile2 all
$(CMAKE_COMMAND) -E cmake_progress_start "/home/noah/Documents/School/Thesis Work/ag_parallel/build/CMakeFiles" 0 $(CMAKE_COMMAND) -E cmake_progress_start /home/nschrick/ag_parallel/build/CMakeFiles 0
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# The main clean target # The main clean target
@ -116,19 +116,6 @@ depend:
$(CMAKE_COMMAND) -S$(CMAKE_SOURCE_DIR) -B$(CMAKE_BINARY_DIR) --check-build-system CMakeFiles/Makefile.cmake 1 $(CMAKE_COMMAND) -S$(CMAKE_SOURCE_DIR) -B$(CMAKE_BINARY_DIR) --check-build-system CMakeFiles/Makefile.cmake 1
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#=============================================================================
# Target rules for targets named doc
# Build rule for target.
doc: cmake_check_build_system
$(MAKE) $(MAKESILENT) -f CMakeFiles/Makefile2 doc
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doc/fast:
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#============================================================================= #=============================================================================
# Target rules for targets named ag_gen # Target rules for targets named ag_gen
@ -142,19 +129,6 @@ ag_gen/fast:
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.PHONY : ag_gen/fast .PHONY : ag_gen/fast
#=============================================================================
# Target rules for targets named dynstr_test
# Build rule for target.
dynstr_test: cmake_check_build_system
$(MAKE) $(MAKESILENT) -f CMakeFiles/Makefile2 dynstr_test
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nm_parser.o: nm_parser.c.o nm_parser.o: nm_parser.c.o
.PHONY : nm_parser.o .PHONY : nm_parser.o
@ -491,30 +465,6 @@ src/mpi/tasks.cpp.s:
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src/tests/mem_test.o: src/tests/mem_test.c.o
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.PHONY : src/util/avail_mem.o .PHONY : src/util/avail_mem.o
@ -665,7 +615,6 @@ src/util/mem.o: src/util/mem.c.o
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@ -674,7 +623,6 @@ src/util/mem.i: src/util/mem.c.i
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src/util/mem.s: src/util/mem.c.s src/util/mem.s: src/util/mem.c.s
@ -683,7 +631,6 @@ src/util/mem.s: src/util/mem.c.s
# target to generate assembly for a file # target to generate assembly for a file
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src/util/redis_manager.o: src/util/redis_manager.cpp.o src/util/redis_manager.o: src/util/redis_manager.cpp.o
@ -814,9 +761,7 @@ help:
@echo "... depend" @echo "... depend"
@echo "... edit_cache" @echo "... edit_cache"
@echo "... rebuild_cache" @echo "... rebuild_cache"
@echo "... doc"
@echo "... ag_gen" @echo "... ag_gen"
@echo "... dynstr_test"
@echo "... nm_parser.o" @echo "... nm_parser.o"
@echo "... nm_parser.i" @echo "... nm_parser.i"
@echo "... nm_parser.s" @echo "... nm_parser.s"
@ -859,9 +804,6 @@ help:
@echo "... src/mpi/tasks.o" @echo "... src/mpi/tasks.o"
@echo "... src/mpi/tasks.i" @echo "... src/mpi/tasks.i"
@echo "... src/mpi/tasks.s" @echo "... src/mpi/tasks.s"
@echo "... src/tests/mem_test.o"
@echo "... src/tests/mem_test.i"
@echo "... src/tests/mem_test.s"
@echo "... src/util/avail_mem.o" @echo "... src/util/avail_mem.o"
@echo "... src/util/avail_mem.i" @echo "... src/util/avail_mem.i"
@echo "... src/util/avail_mem.s" @echo "... src/util/avail_mem.s"

BIN
build/ag_gen
View File

Binary file not shown.

5
build/ag_run.sh
View File

@ -17,8 +17,7 @@ NUM_SERV=${1:-1}
TYPE=${2:-sync} TYPE=${2:-sync}
CARS=${3:-2} CARS=${3:-2}
DBNAME=${4:-tmp} DBNAME=${4:-tmp}
NODES=${5:-2} NODES=${5:-4}
NOW=`date +"%H:%M"`
module load graphviz module load graphviz
module load gcc module load gcc
@ -27,5 +26,5 @@ module load openmpi
module load cmake module load cmake
module load postgresql module load postgresql
#./run.sh 1 sync 2 "$NOW" 2 #./run.sh 1 sync 2 "$TESTING" 2
./run.sh "$NUM_SERV" "$TYPE" "$CARS" "$DBNAME" "$NODES" ./run.sh "$NUM_SERV" "$TYPE" "$CARS" "$DBNAME" "$NODES"

166
build/compile_commands.json
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@ -1,142 +1,132 @@
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"command": "/usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -I/usr/include/postgresql -I\"/home/noah/Documents/School/Thesis Work/ag_parallel/src\" -std=c++14 -fopenmp -DREDIS -g -g -O0 -ggdb -Wall -fopenmp -pedantic -pthread -o CMakeFiles/ag_gen.dir/src/mpi/serialize.cpp.o -c \"/home/noah/Documents/School/Thesis Work/ag_parallel/src/mpi/serialize.cpp\"", "command": "/opt/apps/gcc/8.2.0/bin/g++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -I/usr/include/postgresql -I/home/nschrick/ag_parallel/src -isystem /home/nschrick/pkg/boost/1.77.0/include -isystem /storage/home/nschrick/pkg/openmpi/4.1.2/include -isystem /home/nschrick/pkg/openmpi/4.1.2/include -std=c++14 -fopenmp -g -g -O0 -ggdb -Wall -fopenmp -pedantic -pthread -o CMakeFiles/ag_gen.dir/src/mpi/serialize.cpp.o -c /home/nschrick/ag_parallel/src/mpi/serialize.cpp",
"file": "/home/noah/Documents/School/Thesis Work/ag_parallel/src/mpi/serialize.cpp" "file": "/home/nschrick/ag_parallel/src/mpi/serialize.cpp"
}, },
{ {
"directory": "/home/noah/Documents/School/Thesis Work/ag_parallel/build", "directory": "/home/nschrick/ag_parallel/build",
"command": "/usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -I/usr/include/postgresql -I\"/home/noah/Documents/School/Thesis Work/ag_parallel/src\" -std=c++14 -fopenmp -DREDIS -g -g -O0 -ggdb -Wall -fopenmp -pedantic -pthread -o CMakeFiles/ag_gen.dir/src/mpi/tasks.cpp.o -c \"/home/noah/Documents/School/Thesis Work/ag_parallel/src/mpi/tasks.cpp\"", "command": "/opt/apps/gcc/8.2.0/bin/g++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -I/usr/include/postgresql -I/home/nschrick/ag_parallel/src -isystem /home/nschrick/pkg/boost/1.77.0/include -isystem /storage/home/nschrick/pkg/openmpi/4.1.2/include -isystem /home/nschrick/pkg/openmpi/4.1.2/include -std=c++14 -fopenmp -g -g -O0 -ggdb -Wall -fopenmp -pedantic -pthread -o CMakeFiles/ag_gen.dir/src/mpi/tasks.cpp.o -c /home/nschrick/ag_parallel/src/mpi/tasks.cpp",
"file": "/home/noah/Documents/School/Thesis Work/ag_parallel/src/mpi/tasks.cpp" "file": "/home/nschrick/ag_parallel/src/mpi/tasks.cpp"
},
{
"directory": "/home/noah/Documents/School/Thesis Work/ag_parallel/build",
"command": "/usr/bin/cc -I/usr/include/postgresql -I\"/home/noah/Documents/School/Thesis Work/ag_parallel/src\" -g -o CMakeFiles/dynstr_test.dir/src/util/mem.c.o -c \"/home/noah/Documents/School/Thesis Work/ag_parallel/src/util/mem.c\"",
"file": "/home/noah/Documents/School/Thesis Work/ag_parallel/src/util/mem.c"
},
{
"directory": "/home/noah/Documents/School/Thesis Work/ag_parallel/build",
"command": "/usr/bin/cc -I/usr/include/postgresql -I\"/home/noah/Documents/School/Thesis Work/ag_parallel/src\" -g -o CMakeFiles/dynstr_test.dir/src/tests/mem_test.c.o -c \"/home/noah/Documents/School/Thesis Work/ag_parallel/src/tests/mem_test.c\"",
"file": "/home/noah/Documents/School/Thesis Work/ag_parallel/src/tests/mem_test.c"
} }
] ]

1973
build/nm_parser.c
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118
build/nm_parser.tab.h
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@ -1,22 +1,23 @@
/* A Bison parser, made by GNU Bison 3.8.2. */
/* Bison interface for Yacc-like parsers in C /* A Bison parser, made by GNU Bison 2.4.1. */
Copyright (C) 1984, 1989-1990, 2000-2015, 2018-2021 Free Software Foundation,
Inc.
/* Skeleton interface for Bison's Yacc-like parsers in C
Copyright (C) 1984, 1989, 1990, 2000, 2001, 2002, 2003, 2004, 2005, 2006
Free Software Foundation, Inc.
This program is free software: you can redistribute it and/or modify This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or the Free Software Foundation, either version 3 of the License, or
(at your option) any later version. (at your option) any later version.
This program is distributed in the hope that it will be useful, This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details. GNU General Public License for more details.
You should have received a copy of the GNU General Public License You should have received a copy of the GNU General Public License
along with this program. If not, see <https://www.gnu.org/licenses/>. */ along with this program. If not, see <http://www.gnu.org/licenses/>. */
/* As a special exception, you may create a larger work that contains /* As a special exception, you may create a larger work that contains
part or all of the Bison parser skeleton and distribute that work part or all of the Bison parser skeleton and distribute that work
@ -27,67 +28,53 @@
special exception, which will cause the skeleton and the resulting special exception, which will cause the skeleton and the resulting
Bison output files to be licensed under the GNU General Public Bison output files to be licensed under the GNU General Public
License without this special exception. License without this special exception.
This special exception was added by the Free Software Foundation in This special exception was added by the Free Software Foundation in
version 2.2 of Bison. */ version 2.2 of Bison. */
/* DO NOT RELY ON FEATURES THAT ARE NOT DOCUMENTED in the manual,
especially those whose name start with YY_ or yy_. They are
private implementation details that can be changed or removed. */
#ifndef YY_NM_HOME_NOAH_DOCUMENTS_SCHOOL_THESIS_WORK_AG_PARALLEL_BUILD_NM_PARSER_TAB_H_INCLUDED /* Tokens. */
# define YY_NM_HOME_NOAH_DOCUMENTS_SCHOOL_THESIS_WORK_AG_PARALLEL_BUILD_NM_PARSER_TAB_H_INCLUDED
/* Debug traces. */
#ifndef YYDEBUG
# define YYDEBUG 0
#endif
#if YYDEBUG
extern int nmdebug;
#endif
/* Token kinds. */
#ifndef YYTOKENTYPE #ifndef YYTOKENTYPE
# define YYTOKENTYPE # define YYTOKENTYPE
enum yytokentype /* Put the tokens into the symbol table, so that GDB and other debuggers
{ know about them. */
YYEMPTY = -2, enum yytokentype {
YYEOF = 0, /* "end of file" */ IDENTIFIER = 258,
YYerror = 256, /* error */ INT = 259,
YYUNDEF = 257, /* "invalid token" */ FLOAT = 260,
IDENTIFIER = 258, /* IDENTIFIER */ EQ = 261,
INT = 259, /* INT */ GT = 262,
FLOAT = 260, /* FLOAT */ LT = 263,
EQ = 261, /* EQ */ GEQ = 264,
GT = 262, /* GT */ LEQ = 265,
LT = 263, /* LT */ ONEDIR = 266,
GEQ = 264, /* GEQ */ ONEDIRBACK = 267,
LEQ = 265, /* LEQ */ BIDIR = 268,
ONEDIR = 266, /* ONEDIR */ NOTONEDIR = 269,
ONEDIRBACK = 267, /* ONEDIRBACK */ NOTBIDIR = 270,
BIDIR = 268, /* BIDIR */ NETWORK = 271,
NOTONEDIR = 269, /* NOTONEDIR */ MODEL = 272,
NOTBIDIR = 270, /* NOTBIDIR */ ASSETS = 273,
NETWORK = 271, /* NETWORK */ COLON = 274,
MODEL = 272, /* MODEL */ FACTS = 275,
ASSETS = 273, /* ASSETS */ PERIOD = 276,
COLON = 274, /* COLON */ SEMI = 277,
FACTS = 275, /* FACTS */ QUALITY = 278,
PERIOD = 276, /* PERIOD */ COMMA = 279,
SEMI = 277, /* SEMI */ TOPOLOGY = 280,
QUALITY = 278, /* QUALITY */ WHITESPACE = 281,
COMMA = 279, /* COMMA */ TAGS = 282
TOPOLOGY = 280, /* TOPOLOGY */ };
WHITESPACE = 281, /* WHITESPACE */
TAGS = 282 /* TAGS */
};
typedef enum yytokentype yytoken_kind_t;
#endif #endif
/* Value type. */
#if ! defined YYSTYPE && ! defined YYSTYPE_IS_DECLARED #if ! defined YYSTYPE && ! defined YYSTYPE_IS_DECLARED
union YYSTYPE typedef union YYSTYPE
{ {
#line 25 "/home/noah/Documents/School/Thesis Work/ag_parallel/src/parser/nm-parser/nm_parser.yy"
/* Line 1676 of yacc.c */
#line 25 "/home/nschrick/ag_parallel/src/parser/nm-parser/nm_parser.yy"
struct str_array* arr; struct str_array* arr;
struct list* lst; struct list* lst;
@ -96,19 +83,16 @@ union YYSTYPE
struct fact *fct; struct fact *fct;
char* string; char* string;
#line 100 "/home/noah/Documents/School/Thesis Work/ag_parallel/build/nm_parser.tab.h"
};
typedef union YYSTYPE YYSTYPE; /* Line 1676 of yacc.c */
#line 90 "/home/nschrick/ag_parallel/build/nm_parser.tab.h"
} YYSTYPE;
# define YYSTYPE_IS_TRIVIAL 1 # define YYSTYPE_IS_TRIVIAL 1
# define yystype YYSTYPE /* obsolescent; will be withdrawn */
# define YYSTYPE_IS_DECLARED 1 # define YYSTYPE_IS_DECLARED 1
#endif #endif
extern YYSTYPE nmlval; extern YYSTYPE nmlval;
int nmparse (struct networkmodel* nm);
#endif /* !YY_NM_HOME_NOAH_DOCUMENTS_SCHOOL_THESIS_WORK_AG_PARALLEL_BUILD_NM_PARSER_TAB_H_INCLUDED */

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13
build/run.sh
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@ -53,13 +53,8 @@ fi
if [ "$TYPE" == "$strval1" ]; then if [ "$TYPE" == "$strval1" ]; then
#Old #Old
#./ag_gen -n ../Feb_2021/generic_timeline_maintenance.nm -x ../Feb_2021/Sync/"$NUM_SERV"_Serv/sync_timeline_maintenance.xp -g DOTFILE.dot -t 1 -q 1 -p -a 0.9 #./ag_gen -n ../Feb_2021/generic_timeline_maintenance.nm -x ../Feb_2021/Sync/"$NUM_SERV"_Serv/sync_timeline_maintenance.xp -g DOTFILE.dot -t 1 -q 1 -p -a 0.9
#Curr
#mpirun --mca btl tcp,self --mca btl_tcp_if_include "$ITFC" --mca opal_warn_on_missing_libcuda 0 ./ag_gen -n ../Oct_2021/nm_files/"$CARS"_car_timeline_maintenance.nm -x ../Oct_2021/Sync/4_Exploits/"$NUM_SERV"_Serv/sync_timeline_maintenance.xp -t 1 -q 1 -p -a 0.6 -z "$DBNAME"
#Test 36 hour timeout mpiexec --mca btl_openib_allow_ib 1 --mca btl openib,self,vader --mca opal_warn_on_missing_libcuda 0 --bind-to numa --map-by numa -np "$NODES" --timeout 129600 ./ag_gen -n ../Oct_2021/nm_files/"$CARS"_car_timeline_maintenance.nm -x ../Oct_2021/Sync/10_Exploits/"$NUM_SERV"_Serv/sync_timeline_maintenance.xp -t 1 -q 1 -p -a 0.6 -z "$DBNAME"
# mpiexec --mca btl_openib_allow_ib 1 --mca opal_warn_on_missing_libcuda 0 --mca btl ^uct -np "$NODES" --timeout 129600 ./ag_gen -n ../Oct_2021/nm_files/"$CARS"_car_timeline_maintenance.nm -x ../Oct_2021/Sync/10_Exploits/"$NUM_SERV"_Serv/sync_timeline_maintenance.xp -t 1 -q 1 -p -a 0.6 -z "$DBNAME"
mpiexec --mca btl_openib_allow_ib 1 --mca opal_warn_on_missing_libcuda 0 --bind-to numa --map-by numa -np "$NODES" --timeout 129600 ./ag_gen -n ../Oct_2021/nm_files/"$CARS"_car_timeline_maintenance.nm -x ../Oct_2021/Sync/4_Exploits/"$NUM_SERV"_Serv/sync_timeline_maintenance.xp -t 1 -q 1 -p -a 0.6 -z "$DBNAME"
# 4 Exploit # 4 Exploit
#mpiexec -np "$NODES" --bind-to numa --map-by numa ./ag_gen -n ../Oct_2021/nm_files/"$CARS"_car_timeline_maintenance.nm -x ../Oct_2021/Sync/4_Exploits/"$NUM_SERV"_Serv/sync_timeline_maintenance.xp -t 1 -q 1 -p -a 0.6 -z "$DBNAME" #mpiexec -np "$NODES" --bind-to numa --map-by numa ./ag_gen -n ../Oct_2021/nm_files/"$CARS"_car_timeline_maintenance.nm -x ../Oct_2021/Sync/4_Exploits/"$NUM_SERV"_Serv/sync_timeline_maintenance.xp -t 1 -q 1 -p -a 0.6 -z "$DBNAME"
@ -67,14 +62,12 @@ if [ "$TYPE" == "$strval1" ]; then
elif [ "$TYPE" == "$strval2" ]; then elif [ "$TYPE" == "$strval2" ]; then
#./ag_gen -n ../Feb_2021/generic_timeline_maintenance.nm -x ../Feb_2021/Non_Sync/"$NUM_SERV"_Serv/generic_timeline_maintenance.xp -g DOTFILE.dot -t 1 -q 1 -p -a 0.9 #./ag_gen -n ../Feb_2021/generic_timeline_maintenance.nm -x ../Feb_2021/Non_Sync/"$NUM_SERV"_Serv/generic_timeline_maintenance.xp -g DOTFILE.dot -t 1 -q 1 -p -a 0.9
#Test
#mpirun --mca btl tcp,self --mca btl_tcp_if_include "$ITFC" --mca opal_warn_on_missing_libcuda 0 ./ag_gen -n ../Oct_2021/nm_files/"$CARS"_car_timeline_maintenance.nm -x ../Oct_2021/Non_Sync/4_Exploits/"$NUM_SERV"_Serv/generic_timeline_maintenance.xp -t 1 -q 1 -p -a 0.6 -z "$DBNAME"
mpiexec --mca btl_openib_allow_ib 1 --mca opal_warn_on_missing_libcuda 0 -np "$NODES" --timeout 129600 ./ag_gen -n ../Oct_2021/nm_files/"$CARS"_car_timeline_maintenance.nm -x ../Oct_2021/Non_Sync/10_Exploits/"$NUM_SERV"_Serv/generic_timeline_maintenance.xp -t 1 -q 1 -p -a 0.6 -z "$DBNAME" mpiexec --mca btl_openib_allow_ib 1 --mca btl openib,self,vader --mca opal_warn_on_missing_libcuda 0 --bind-to numa --map-by numa -np "$NODES" --timeout 129600 ./ag_gen -n ../Oct_2021/nm_files/"$CARS"_car_timeline_maintenance.nm -x ../Oct_2021/Non_Sync/10_Exploits/"$NUM_SERV"_Serv/generic_timeline_maintenance.xp -t 1 -q 1 -p -a 0.6 -z "$DBNAME"
else else
echo "Running default." echo "Running default."
mpiexec --mca btl_openib_allow_ib 1 --mca opal_warn_on_missing_libcuda 0 --timeout 129600 ./ag_gen -n ../Oct_2021/nm_files/1_car_timeline_maintenance.nm -x ../Oct_2021/Sync/10_Exploits/1_Serv/sync_timeline_maintenance.xp -t 1 -q 1 -p -a 0.6 -z "$DBNAME" mpiexec --mca btl_openib_allow_ib 1 --mca btl openib,self,vader --mca opal_warn_on_missing_libcuda 0 --bind-to numa --map-by numa --timeout 129600 ./ag_gen -n ../Oct_2021/nm_files/1_car_timeline_maintenance.nm -x ../Oct_2021/Sync/10_Exploits/1_Serv/sync_timeline_maintenance.xp -t 1 -q 1 -p -a 0.6 -z "$DBNAME"
fi fi

15
build/sync_data_col.sh
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@ -2,13 +2,14 @@
#Choose folder #Choose folder
#folder=omp #folder=omp
#folder=mpi folder=mpi
#folder=serial #folder=serial
folder=serialnosync #folder=serialnosync
#folder=ompnosync #folder=ompnosync
TIMESTR=`date +"%s"`
DBNAME="$folder" DBNAME="${folder}_${TIMESTR}"
nodelist=compute04 nodelist=compute01,compute04,compute07,compute10,compute11,compute12
NODES=(2 3 4 5 6 7 8 9 10 11 12)
pwd=`pwd` pwd=`pwd`
#one=1 #one=1
@ -21,6 +22,10 @@ if [[ "$folder" == serial || "$folder" == serialnosync || "$folder" == mpi ]]; t
thrds=(4 8 16 32) thrds=(4 8 16 32)
fi fi
if [[ "$folder" != mpi ]]; then
NODES=(1)
fi
QSIZE=1 QSIZE=1
SKIPSYNC=false SKIPSYNC=false

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build/xp_parser.c
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138
build/xp_parser.tab.h
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@ -1,22 +1,23 @@
/* A Bison parser, made by GNU Bison 3.8.2. */
/* Bison interface for Yacc-like parsers in C /* A Bison parser, made by GNU Bison 2.4.1. */
Copyright (C) 1984, 1989-1990, 2000-2015, 2018-2021 Free Software Foundation,
Inc.
/* Skeleton interface for Bison's Yacc-like parsers in C
Copyright (C) 1984, 1989, 1990, 2000, 2001, 2002, 2003, 2004, 2005, 2006
Free Software Foundation, Inc.
This program is free software: you can redistribute it and/or modify This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or the Free Software Foundation, either version 3 of the License, or
(at your option) any later version. (at your option) any later version.
This program is distributed in the hope that it will be useful, This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details. GNU General Public License for more details.
You should have received a copy of the GNU General Public License You should have received a copy of the GNU General Public License
along with this program. If not, see <https://www.gnu.org/licenses/>. */ along with this program. If not, see <http://www.gnu.org/licenses/>. */
/* As a special exception, you may create a larger work that contains /* As a special exception, you may create a larger work that contains
part or all of the Bison parser skeleton and distribute that work part or all of the Bison parser skeleton and distribute that work
@ -27,77 +28,63 @@
special exception, which will cause the skeleton and the resulting special exception, which will cause the skeleton and the resulting
Bison output files to be licensed under the GNU General Public Bison output files to be licensed under the GNU General Public
License without this special exception. License without this special exception.
This special exception was added by the Free Software Foundation in This special exception was added by the Free Software Foundation in
version 2.2 of Bison. */ version 2.2 of Bison. */
/* DO NOT RELY ON FEATURES THAT ARE NOT DOCUMENTED in the manual,
especially those whose name start with YY_ or yy_. They are
private implementation details that can be changed or removed. */
#ifndef YY_XP_HOME_NOAH_DOCUMENTS_SCHOOL_THESIS_WORK_AG_PARALLEL_BUILD_XP_PARSER_TAB_H_INCLUDED /* Tokens. */
# define YY_XP_HOME_NOAH_DOCUMENTS_SCHOOL_THESIS_WORK_AG_PARALLEL_BUILD_XP_PARSER_TAB_H_INCLUDED
/* Debug traces. */
#ifndef YYDEBUG
# define YYDEBUG 0
#endif
#if YYDEBUG
extern int xpdebug;
#endif
/* Token kinds. */
#ifndef YYTOKENTYPE #ifndef YYTOKENTYPE
# define YYTOKENTYPE # define YYTOKENTYPE
enum yytokentype /* Put the tokens into the symbol table, so that GDB and other debuggers
{ know about them. */
YYEMPTY = -2, enum yytokentype {
YYEOF = 0, /* "end of file" */ IDENTIFIER = 258,
YYerror = 256, /* error */ INT = 259,
YYUNDEF = 257, /* "invalid token" */ FLOAT = 260,
IDENTIFIER = 258, /* IDENTIFIER */ GROUP = 261,
INT = 259, /* INT */ EQ = 262,
FLOAT = 260, /* FLOAT */ NEQ = 263,
GROUP = 261, /* GROUP */ GT = 264,
EQ = 262, /* EQ */ LT = 265,
NEQ = 263, /* NEQ */ GEQ = 266,
GT = 264, /* GT */ LEQ = 267,
LT = 265, /* LT */ PLUSEQ = 268,
GEQ = 266, /* GEQ */ SUBEQ = 269,
LEQ = 267, /* LEQ */ ONEDIR = 270,
PLUSEQ = 268, /* PLUSEQ */ ONEDIRBACK = 271,
SUBEQ = 269, /* SUBEQ */ BIDIR = 272,
ONEDIR = 270, /* ONEDIR */ NOTONEDIR = 273,
ONEDIRBACK = 271, /* ONEDIRBACK */ NOTBIDIR = 274,
BIDIR = 272, /* BIDIR */ ADD = 275,
NOTONEDIR = 273, /* NOTONEDIR */ INSERT = 276,
NOTBIDIR = 274, /* NOTBIDIR */ UPDATE = 277,
ADD = 275, /* ADD */ DELETE = 278,
INSERT = 276, /* INSERT */ REMOVE = 279,
UPDATE = 277, /* UPDATE */ EXPLOIT = 280,
DELETE = 278, /* DELETE */ PRECONDITIONS = 281,
REMOVE = 279, /* REMOVE */ POSTCONDITIONS = 282,
EXPLOIT = 280, /* EXPLOIT */ COLON = 283,
PRECONDITIONS = 281, /* PRECONDITIONS */ FACTS = 284,
POSTCONDITIONS = 282, /* POSTCONDITIONS */ PERIOD = 285,
COLON = 283, /* COLON */ SEMI = 286,
FACTS = 284, /* FACTS */ QUALITY = 287,
PERIOD = 285, /* PERIOD */ COMMA = 288,
SEMI = 286, /* SEMI */ TOPOLOGY = 289,
QUALITY = 287, /* QUALITY */ WHITESPACE = 290,
COMMA = 288, /* COMMA */ LPAREN = 291,
TOPOLOGY = 289, /* TOPOLOGY */ RPAREN = 292
WHITESPACE = 290, /* WHITESPACE */ };
LPAREN = 291, /* LPAREN */
RPAREN = 292 /* RPAREN */
};
typedef enum yytokentype yytoken_kind_t;
#endif #endif
/* Value type. */
#if ! defined YYSTYPE && ! defined YYSTYPE_IS_DECLARED #if ! defined YYSTYPE && ! defined YYSTYPE_IS_DECLARED
union YYSTYPE typedef union YYSTYPE
{ {
#line 21 "/home/noah/Documents/School/Thesis Work/ag_parallel/src/parser/xp-parser/xp_parser.yy"
/* Line 1676 of yacc.c */
#line 21 "/home/nschrick/ag_parallel/src/parser/xp-parser/xp_parser.yy"
struct str_array *arr; struct str_array *arr;
struct list *list; struct list *list;
@ -107,19 +94,16 @@ union YYSTYPE
struct fact *fct; struct fact *fct;
char *string; char *string;
#line 111 "/home/noah/Documents/School/Thesis Work/ag_parallel/build/xp_parser.tab.h"
};
typedef union YYSTYPE YYSTYPE; /* Line 1676 of yacc.c */
#line 101 "/home/nschrick/ag_parallel/build/xp_parser.tab.h"
} YYSTYPE;
# define YYSTYPE_IS_TRIVIAL 1 # define YYSTYPE_IS_TRIVIAL 1
# define yystype YYSTYPE /* obsolescent; will be withdrawn */
# define YYSTYPE_IS_DECLARED 1 # define YYSTYPE_IS_DECLARED 1
#endif #endif
extern YYSTYPE xplval; extern YYSTYPE xplval;
int xpparse (struct list *xplist);
#endif /* !YY_XP_HOME_NOAH_DOCUMENTS_SCHOOL_THESIS_WORK_AG_PARALLEL_BUILD_XP_PARSER_TAB_H_INCLUDED */

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