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Noah L. Schrick 2022-02-04 23:43:38 -06:00
parent 915d679b9c
commit 19762e4090
13 changed files with 3802 additions and 3261 deletions
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74
build/Makefile
View File

@ -48,19 +48,19 @@ cmake_force:
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@ -68,7 +68,7 @@ CMAKE_BINARY_DIR = /home/nschrick/ag_parallel/build
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166
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@ -1,132 +1,142 @@
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"command": "/opt/apps/gcc/8.2.0/bin/g++ -DBOOST_ALL_NO_LIB -DBOOST_MPI_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -I/usr/include/postgresql -I/home/nschrick/ag_parallel/src -isystem /home/nschrick/pkg/boost/1.77.0/include -isystem /storage/home/nschrick/pkg/openmpi/4.1.2/include -isystem /home/nschrick/pkg/openmpi/4.1.2/include -std=c++14 -fopenmp -g -g -O0 -ggdb -Wall -fopenmp -pedantic -pthread -o CMakeFiles/ag_gen.dir/src/mpi/tasks.cpp.o -c /home/nschrick/ag_parallel/src/mpi/tasks.cpp", "command": "/usr/bin/c++ -DBOOST_MPI_DYN_LINK -DBOOST_MPI_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -I/usr/include/postgresql -I\"/home/noah/Documents/School/Thesis Work/ag_parallel/src\" -std=c++14 -fopenmp -DREDIS -g -g -O0 -ggdb -Wall -fopenmp -pedantic -pthread -o CMakeFiles/ag_gen.dir/src/mpi/tasks.cpp.o -c \"/home/noah/Documents/School/Thesis Work/ag_parallel/src/mpi/tasks.cpp\"",
"file": "/home/nschrick/ag_parallel/src/mpi/tasks.cpp" "file": "/home/noah/Documents/School/Thesis Work/ag_parallel/src/mpi/tasks.cpp"
},
{
"directory": "/home/noah/Documents/School/Thesis Work/ag_parallel/build",
"command": "/usr/bin/cc -I/usr/include/postgresql -I\"/home/noah/Documents/School/Thesis Work/ag_parallel/src\" -g -o CMakeFiles/dynstr_test.dir/src/util/mem.c.o -c \"/home/noah/Documents/School/Thesis Work/ag_parallel/src/util/mem.c\"",
"file": "/home/noah/Documents/School/Thesis Work/ag_parallel/src/util/mem.c"
},
{
"directory": "/home/noah/Documents/School/Thesis Work/ag_parallel/build",
"command": "/usr/bin/cc -I/usr/include/postgresql -I\"/home/noah/Documents/School/Thesis Work/ag_parallel/src\" -g -o CMakeFiles/dynstr_test.dir/src/tests/mem_test.c.o -c \"/home/noah/Documents/School/Thesis Work/ag_parallel/src/tests/mem_test.c\"",
"file": "/home/noah/Documents/School/Thesis Work/ag_parallel/src/tests/mem_test.c"
} }
] ]

1975
build/nm_parser.c
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112
build/nm_parser.tab.h
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@ -1,10 +1,9 @@
/* A Bison parser, made by GNU Bison 3.8.2. */
/* A Bison parser, made by GNU Bison 2.4.1. */ /* Bison interface for Yacc-like parsers in C
/* Skeleton interface for Bison's Yacc-like parsers in C Copyright (C) 1984, 1989-1990, 2000-2015, 2018-2021 Free Software Foundation,
Inc.
Copyright (C) 1984, 1989, 1990, 2000, 2001, 2002, 2003, 2004, 2005, 2006
Free Software Foundation, Inc.
This program is free software: you can redistribute it and/or modify This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by it under the terms of the GNU General Public License as published by
@ -17,7 +16,7 @@
GNU General Public License for more details. GNU General Public License for more details.
You should have received a copy of the GNU General Public License You should have received a copy of the GNU General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>. */ along with this program. If not, see <https://www.gnu.org/licenses/>. */
/* As a special exception, you may create a larger work that contains /* As a special exception, you may create a larger work that contains
part or all of the Bison parser skeleton and distribute that work part or all of the Bison parser skeleton and distribute that work
@ -32,49 +31,63 @@
This special exception was added by the Free Software Foundation in This special exception was added by the Free Software Foundation in
version 2.2 of Bison. */ version 2.2 of Bison. */
/* DO NOT RELY ON FEATURES THAT ARE NOT DOCUMENTED in the manual,
especially those whose name start with YY_ or yy_. They are
private implementation details that can be changed or removed. */
/* Tokens. */ #ifndef YY_NM_HOME_NOAH_DOCUMENTS_SCHOOL_THESIS_WORK_AG_PARALLEL_BUILD_NM_PARSER_TAB_H_INCLUDED
#ifndef YYTOKENTYPE # define YY_NM_HOME_NOAH_DOCUMENTS_SCHOOL_THESIS_WORK_AG_PARALLEL_BUILD_NM_PARSER_TAB_H_INCLUDED
# define YYTOKENTYPE /* Debug traces. */
/* Put the tokens into the symbol table, so that GDB and other debuggers #ifndef YYDEBUG
know about them. */ # define YYDEBUG 0
enum yytokentype { #endif
IDENTIFIER = 258, #if YYDEBUG
INT = 259, extern int nmdebug;
FLOAT = 260,
EQ = 261,
GT = 262,
LT = 263,
GEQ = 264,
LEQ = 265,
ONEDIR = 266,
ONEDIRBACK = 267,
BIDIR = 268,
NOTONEDIR = 269,
NOTBIDIR = 270,
NETWORK = 271,
MODEL = 272,
ASSETS = 273,
COLON = 274,
FACTS = 275,
PERIOD = 276,
SEMI = 277,
QUALITY = 278,
COMMA = 279,
TOPOLOGY = 280,
WHITESPACE = 281,
TAGS = 282
};
#endif #endif
/* Token kinds. */
#ifndef YYTOKENTYPE
# define YYTOKENTYPE
enum yytokentype
{
YYEMPTY = -2,
YYEOF = 0, /* "end of file" */
YYerror = 256, /* error */
YYUNDEF = 257, /* "invalid token" */
IDENTIFIER = 258, /* IDENTIFIER */
INT = 259, /* INT */
FLOAT = 260, /* FLOAT */
EQ = 261, /* EQ */
GT = 262, /* GT */
LT = 263, /* LT */
GEQ = 264, /* GEQ */
LEQ = 265, /* LEQ */
ONEDIR = 266, /* ONEDIR */
ONEDIRBACK = 267, /* ONEDIRBACK */
BIDIR = 268, /* BIDIR */
NOTONEDIR = 269, /* NOTONEDIR */
NOTBIDIR = 270, /* NOTBIDIR */
NETWORK = 271, /* NETWORK */
MODEL = 272, /* MODEL */
ASSETS = 273, /* ASSETS */
COLON = 274, /* COLON */
FACTS = 275, /* FACTS */
PERIOD = 276, /* PERIOD */
SEMI = 277, /* SEMI */
QUALITY = 278, /* QUALITY */
COMMA = 279, /* COMMA */
TOPOLOGY = 280, /* TOPOLOGY */
WHITESPACE = 281, /* WHITESPACE */
TAGS = 282 /* TAGS */
};
typedef enum yytokentype yytoken_kind_t;
#endif
/* Value type. */
#if ! defined YYSTYPE && ! defined YYSTYPE_IS_DECLARED #if ! defined YYSTYPE && ! defined YYSTYPE_IS_DECLARED
typedef union YYSTYPE union YYSTYPE
{ {
#line 25 "/home/noah/Documents/School/Thesis Work/ag_parallel/src/parser/nm-parser/nm_parser.yy"
/* Line 1676 of yacc.c */
#line 25 "/home/nschrick/ag_parallel/src/parser/nm-parser/nm_parser.yy"
struct str_array* arr; struct str_array* arr;
struct list* lst; struct list* lst;
@ -83,16 +96,19 @@ typedef union YYSTYPE
struct fact *fct; struct fact *fct;
char* string; char* string;
#line 100 "/home/noah/Documents/School/Thesis Work/ag_parallel/build/nm_parser.tab.h"
};
/* Line 1676 of yacc.c */ typedef union YYSTYPE YYSTYPE;
#line 90 "/home/nschrick/ag_parallel/build/nm_parser.tab.h"
} YYSTYPE;
# define YYSTYPE_IS_TRIVIAL 1 # define YYSTYPE_IS_TRIVIAL 1
# define yystype YYSTYPE /* obsolescent; will be withdrawn */
# define YYSTYPE_IS_DECLARED 1 # define YYSTYPE_IS_DECLARED 1
#endif #endif
extern YYSTYPE nmlval; extern YYSTYPE nmlval;
int nmparse (struct networkmodel* nm);
#endif /* !YY_NM_HOME_NOAH_DOCUMENTS_SCHOOL_THESIS_WORK_AG_PARALLEL_BUILD_NM_PARSER_TAB_H_INCLUDED */

1025
build/nm_scanner.c
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2175
build/xp_parser.c
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132
build/xp_parser.tab.h
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@ -1,10 +1,9 @@
/* A Bison parser, made by GNU Bison 3.8.2. */
/* A Bison parser, made by GNU Bison 2.4.1. */ /* Bison interface for Yacc-like parsers in C
/* Skeleton interface for Bison's Yacc-like parsers in C Copyright (C) 1984, 1989-1990, 2000-2015, 2018-2021 Free Software Foundation,
Inc.
Copyright (C) 1984, 1989, 1990, 2000, 2001, 2002, 2003, 2004, 2005, 2006
Free Software Foundation, Inc.
This program is free software: you can redistribute it and/or modify This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by it under the terms of the GNU General Public License as published by
@ -17,7 +16,7 @@
GNU General Public License for more details. GNU General Public License for more details.
You should have received a copy of the GNU General Public License You should have received a copy of the GNU General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>. */ along with this program. If not, see <https://www.gnu.org/licenses/>. */
/* As a special exception, you may create a larger work that contains /* As a special exception, you may create a larger work that contains
part or all of the Bison parser skeleton and distribute that work part or all of the Bison parser skeleton and distribute that work
@ -32,59 +31,73 @@
This special exception was added by the Free Software Foundation in This special exception was added by the Free Software Foundation in
version 2.2 of Bison. */ version 2.2 of Bison. */
/* DO NOT RELY ON FEATURES THAT ARE NOT DOCUMENTED in the manual,
especially those whose name start with YY_ or yy_. They are
private implementation details that can be changed or removed. */
/* Tokens. */ #ifndef YY_XP_HOME_NOAH_DOCUMENTS_SCHOOL_THESIS_WORK_AG_PARALLEL_BUILD_XP_PARSER_TAB_H_INCLUDED
#ifndef YYTOKENTYPE # define YY_XP_HOME_NOAH_DOCUMENTS_SCHOOL_THESIS_WORK_AG_PARALLEL_BUILD_XP_PARSER_TAB_H_INCLUDED
# define YYTOKENTYPE /* Debug traces. */
/* Put the tokens into the symbol table, so that GDB and other debuggers #ifndef YYDEBUG
know about them. */ # define YYDEBUG 0
enum yytokentype { #endif
IDENTIFIER = 258, #if YYDEBUG
INT = 259, extern int xpdebug;
FLOAT = 260,
GROUP = 261,
EQ = 262,
NEQ = 263,
GT = 264,
LT = 265,
GEQ = 266,
LEQ = 267,
PLUSEQ = 268,
SUBEQ = 269,
ONEDIR = 270,
ONEDIRBACK = 271,
BIDIR = 272,
NOTONEDIR = 273,
NOTBIDIR = 274,
ADD = 275,
INSERT = 276,
UPDATE = 277,
DELETE = 278,
REMOVE = 279,
EXPLOIT = 280,
PRECONDITIONS = 281,
POSTCONDITIONS = 282,
COLON = 283,
FACTS = 284,
PERIOD = 285,
SEMI = 286,
QUALITY = 287,
COMMA = 288,
TOPOLOGY = 289,
WHITESPACE = 290,
LPAREN = 291,
RPAREN = 292
};
#endif #endif
/* Token kinds. */
#ifndef YYTOKENTYPE
# define YYTOKENTYPE
enum yytokentype
{
YYEMPTY = -2,
YYEOF = 0, /* "end of file" */
YYerror = 256, /* error */
YYUNDEF = 257, /* "invalid token" */
IDENTIFIER = 258, /* IDENTIFIER */
INT = 259, /* INT */
FLOAT = 260, /* FLOAT */
GROUP = 261, /* GROUP */
EQ = 262, /* EQ */
NEQ = 263, /* NEQ */
GT = 264, /* GT */
LT = 265, /* LT */
GEQ = 266, /* GEQ */
LEQ = 267, /* LEQ */
PLUSEQ = 268, /* PLUSEQ */
SUBEQ = 269, /* SUBEQ */
ONEDIR = 270, /* ONEDIR */
ONEDIRBACK = 271, /* ONEDIRBACK */
BIDIR = 272, /* BIDIR */
NOTONEDIR = 273, /* NOTONEDIR */
NOTBIDIR = 274, /* NOTBIDIR */
ADD = 275, /* ADD */
INSERT = 276, /* INSERT */
UPDATE = 277, /* UPDATE */
DELETE = 278, /* DELETE */
REMOVE = 279, /* REMOVE */
EXPLOIT = 280, /* EXPLOIT */
PRECONDITIONS = 281, /* PRECONDITIONS */
POSTCONDITIONS = 282, /* POSTCONDITIONS */
COLON = 283, /* COLON */
FACTS = 284, /* FACTS */
PERIOD = 285, /* PERIOD */
SEMI = 286, /* SEMI */
QUALITY = 287, /* QUALITY */
COMMA = 288, /* COMMA */
TOPOLOGY = 289, /* TOPOLOGY */
WHITESPACE = 290, /* WHITESPACE */
LPAREN = 291, /* LPAREN */
RPAREN = 292 /* RPAREN */
};
typedef enum yytokentype yytoken_kind_t;
#endif
/* Value type. */
#if ! defined YYSTYPE && ! defined YYSTYPE_IS_DECLARED #if ! defined YYSTYPE && ! defined YYSTYPE_IS_DECLARED
typedef union YYSTYPE union YYSTYPE
{ {
#line 21 "/home/noah/Documents/School/Thesis Work/ag_parallel/src/parser/xp-parser/xp_parser.yy"
/* Line 1676 of yacc.c */
#line 21 "/home/nschrick/ag_parallel/src/parser/xp-parser/xp_parser.yy"
struct str_array *arr; struct str_array *arr;
struct list *list; struct list *list;
@ -94,16 +107,19 @@ typedef union YYSTYPE
struct fact *fct; struct fact *fct;
char *string; char *string;
#line 111 "/home/noah/Documents/School/Thesis Work/ag_parallel/build/xp_parser.tab.h"
};
/* Line 1676 of yacc.c */ typedef union YYSTYPE YYSTYPE;
#line 101 "/home/nschrick/ag_parallel/build/xp_parser.tab.h"
} YYSTYPE;
# define YYSTYPE_IS_TRIVIAL 1 # define YYSTYPE_IS_TRIVIAL 1
# define yystype YYSTYPE /* obsolescent; will be withdrawn */
# define YYSTYPE_IS_DECLARED 1 # define YYSTYPE_IS_DECLARED 1
#endif #endif
extern YYSTYPE xplval; extern YYSTYPE xplval;
int xpparse (struct list *xplist);
#endif /* !YY_XP_HOME_NOAH_DOCUMENTS_SCHOOL_THESIS_WORK_AG_PARALLEL_BUILD_XP_PARSER_TAB_H_INCLUDED */

1088
build/xp_scanner.c
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34
src/ag_gen/ag_gen.cpp
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@ -384,7 +384,7 @@ AGGenInstance &AGGen::generate(bool batch_process, int batch_size, int numThrd,
two_alloc = alloc-1; two_alloc = alloc-1;
reduc_factor = 1; reduc_factor = 1;
} }
std::cout << "World Size: " << world.size() << " Allocated to Task 1: " << alloc << " Allocated to Task 2: " << two_alloc << "Ceil val: " << ceil_val << std::endl; //std::cout << "World Size: " << world.size() << " Allocated to Task 1: " << alloc << " Allocated to Task 2: " << two_alloc << "Ceil val: " << ceil_val << std::endl;
//Create Communicators //Create Communicators
//Note, these each return 2 handles! //Note, these each return 2 handles!
@ -395,8 +395,8 @@ AGGenInstance &AGGen::generate(bool batch_process, int batch_size, int numThrd,
} }
else else
ttwo_comm = world.split(world.rank() >= send_check(world, alloc) && world.rank() <= (alloc+two_alloc)); ttwo_comm = world.split(world.rank() >= send_check(world, alloc) && world.rank() <= (alloc+two_alloc));
std::cout << "TCOMM SIZE: " << tcomm.size() << std::endl; //std::cout << "TCOMM SIZE: " << tcomm.size() << std::endl;
std::cout << "TTWO_COMM SIZE: " << ttwo_comm.size() << std::endl; //std::cout << "TTWO_COMM SIZE: " << ttwo_comm.size() << std::endl;
while (!localFrontier.empty() || !unex_empty() || world.rank() > 0){//while starts while (!localFrontier.empty() || !unex_empty() || world.rank() > 0){//while starts
//Node 0 needs to tell other nodes to continue //Node 0 needs to tell other nodes to continue
@ -410,7 +410,7 @@ AGGenInstance &AGGen::generate(bool batch_process, int batch_size, int numThrd,
else { else {
//If we don't have the go-ahead, check for the Finalize message. //If we don't have the go-ahead, check for the Finalize message.
std::cout << "Node " << world.rank() << " is waiting for the go-ahead or finalize message." << std::endl; //std::cout << "Node " << world.rank() << " is waiting for the go-ahead or finalize message." << std::endl;
while(!world.iprobe(0, 14)){ while(!world.iprobe(0, 14)){
if(world.iprobe(0, 15)){ if(world.iprobe(0, 15)){
mpi_exit = 1; mpi_exit = 1;
@ -455,7 +455,7 @@ AGGenInstance &AGGen::generate(bool batch_process, int batch_size, int numThrd,
struct timeval t11,t12; struct timeval t11,t12;
gettimeofday(&t11,NULL); gettimeofday(&t11,NULL);
task_one(instance, current_state, exploit_list, od_map, alloc, two_alloc, reduc_factor, num_tasks, world, tcomm); task_one(instance, current_state, exploit_list, od_map, alloc, two_alloc, reduc_factor, num_tasks, world, tcomm);
std::cout << "Finished Task 1 as Node: " << world.rank() << std::endl; //std::cout << "Finished Task 1 as Node: " << world.rank() << std::endl;
gettimeofday(&t12,NULL); gettimeofday(&t12,NULL);
total_task1+=(t12.tv_sec-t11.tv_sec)*1000.0+(t12.tv_usec-t11.tv_usec)/1000.0; total_task1+=(t12.tv_sec-t11.tv_sec)*1000.0+(t12.tv_usec-t11.tv_usec)/1000.0;
} }
@ -472,7 +472,7 @@ AGGenInstance &AGGen::generate(bool batch_process, int batch_size, int numThrd,
gettimeofday(&t21,NULL); gettimeofday(&t21,NULL);
task_two(instance, alloc, two_alloc, world, localFrontier, mem_threshold,\ task_two(instance, alloc, two_alloc, world, localFrontier, mem_threshold,\
ttwo_comm, ex_groups, hash_map); ttwo_comm, ex_groups, hash_map);
std::cout << "Finished Task 2 as Node: " << world.rank() << std::endl; //std::cout << "Finished Task 2 as Node: " << world.rank() << std::endl;
//Wait for all Task 2 nodes to finish //Wait for all Task 2 nodes to finish
while(ttwo_comm.iprobe(mpi::any_source, 3) || ttwo_comm.iprobe(mpi::any_source, 4)){ while(ttwo_comm.iprobe(mpi::any_source, 3) || ttwo_comm.iprobe(mpi::any_source, 4)){
@ -499,7 +499,7 @@ AGGenInstance &AGGen::generate(bool batch_process, int batch_size, int numThrd,
if(world.size() == 2){ if(world.size() == 2){
mpi::request tdone_req = world.isend(1, 2, 1); mpi::request tdone_req = world.isend(1, 2, 1);
tdone_req.wait(); tdone_req.wait();
std::cout << "Node " << world.rank() << " sent finished message." << std::endl; //std::cout << "Node " << world.rank() << " sent finished message." << std::endl;
break; break;
} }
@ -510,7 +510,7 @@ AGGenInstance &AGGen::generate(bool batch_process, int batch_size, int numThrd,
} }
} }
std::cout << "Task 2 Finished." << std::endl; //std::cout << "Task 2 Finished." << std::endl;
} }
} }
@ -525,7 +525,7 @@ AGGenInstance &AGGen::generate(bool batch_process, int batch_size, int numThrd,
*/ */
//If we haven't been told that task 2 is finished, and if we still more facts or states to update: //If we haven't been told that task 2 is finished, and if we still more facts or states to update:
//while(!world.iprobe(1+alloc, 2) && world.iprobe(mpi::any_source, 3) && world.iprobe(mpi::any_source, 4) && world.iprobe(mpi::any_source, 5)) //while(!world.iprobe(1+alloc, 2) && world.iprobe(mpi::any_source, 3) && world.iprobe(mpi::any_source, 4) && world.iprobe(mpi::any_source, 5))
std::cout << "Node " << world.rank() << " is waiting for Task 2 completion." << std::endl; //std::cout << "Node " << world.rank() << " is waiting for Task 2 completion." << std::endl;
int finished_signal = 0; int finished_signal = 0;
if(world.iprobe(mpi::any_source, 2)){ if(world.iprobe(mpi::any_source, 2)){
world.recv(mpi::any_source, 2, finished_signal); world.recv(mpi::any_source, 2, finished_signal);
@ -538,9 +538,9 @@ AGGenInstance &AGGen::generate(bool batch_process, int batch_size, int numThrd,
if(world.iprobe(mpi::any_source, 2)){ if(world.iprobe(mpi::any_source, 2)){
//Prevent double-pulling //Prevent double-pulling
if(!finished_signal){ if(!finished_signal){
std::cout << "Else nodes received task 2 completion message." << std::endl; //std::cout << "Else nodes received task 2 completion message." << std::endl;
world.recv(mpi::any_source, 2, finished_signal); world.recv(mpi::any_source, 2, finished_signal);
std::cout << "Receive message complete." << std::endl; //std::cout << "Receive message complete." << std::endl;
} }
} }
@ -571,20 +571,20 @@ AGGenInstance &AGGen::generate(bool batch_process, int batch_size, int numThrd,
gettimeofday(&t31,NULL); gettimeofday(&t31,NULL);
task_three(instance, critical_state, localFrontier, mem_threshold, world,\ task_three(instance, critical_state, localFrontier, mem_threshold, world,\
alloc, two_alloc, current_state, exploit, assetGroup, hash_map); alloc, two_alloc, current_state, exploit, assetGroup, hash_map);
std::cout << "Task 3 finished." << std::endl; //std::cout << "Task 3 finished." << std::endl;
gettimeofday(&t32,NULL); gettimeofday(&t32,NULL);
total_task3+=(t32.tv_sec-t31.tv_sec)*1000.0+(t32.tv_usec-t31.tv_usec)/1000.0; total_task3+=(t32.tv_sec-t31.tv_sec)*1000.0+(t32.tv_usec-t31.tv_usec)/1000.0;
} }
} //Node 0 Task 3 wait ends } //Node 0 Task 3 wait ends
} //while probe/instance update ends } //while probe/instance update ends
std::cout << "Node " << world.rank() << " has finished Task 2 waiting." << std::endl; //std::cout << "Node " << world.rank() << " has finished Task 2 waiting." << std::endl;
} //else wait ends } //else wait ends
} }
//Task Four //Task Four
if (world.rank() == send_check(world, alloc+two_alloc)){ if (world.rank() == send_check(world, alloc+two_alloc)){
if(world.iprobe(0, 7) || world.iprobe(0, 8)){ if(world.iprobe(0, 7) || world.iprobe(0, 8)){
std::cout << "Node " << world.rank() << " is starting Task 4." << std::endl; //std::cout << "Node " << world.rank() << " is starting Task 4." << std::endl;
std::vector<Factbase> factbases_dump; std::vector<Factbase> factbases_dump;
std::vector<Edge> edges_dump; std::vector<Edge> edges_dump;
world.recv(0, 7, factbases_dump); world.recv(0, 7, factbases_dump);
@ -592,7 +592,7 @@ AGGenInstance &AGGen::generate(bool batch_process, int batch_size, int numThrd,
instance.factbases = factbases_dump; instance.factbases = factbases_dump;
instance.edges = edges_dump; instance.edges = edges_dump;
//task_four(instance); //task_four(instance);
std::cout << "Task 4 finished." << std::endl; //std::cout << "Task 4 finished." << std::endl;
struct timeval t41,t42; struct timeval t41,t42;
gettimeofday(&t41,NULL); gettimeofday(&t41,NULL);
save_ag_to_db(instance, true); save_ag_to_db(instance, true);
@ -634,7 +634,7 @@ AGGenInstance &AGGen::generate(bool batch_process, int batch_size, int numThrd,
} }
} }
std::cout << "Node " << world.rank() << " moving to next iter" << std::endl; //std::cout << "Node " << world.rank() << " moving to next iter" << std::endl;
} //while ends } //while ends
if(world.rank() == 0){ if(world.rank() == 0){
@ -651,7 +651,7 @@ AGGenInstance &AGGen::generate(bool batch_process, int batch_size, int numThrd,
auto ag_end= std::chrono::system_clock::now(); auto ag_end= std::chrono::system_clock::now();
}//OpenMP block ends }//OpenMP block ends
std::cout << "Process " << world.rank() << " is finishing." << std::endl; //std::cout << "Process " << world.rank() << " is finishing." << std::endl;
//Wait for db ops to finish //Wait for db ops to finish
world.barrier(); world.barrier();
if(world.rank() == 0){ if(world.rank() == 0){

204
src/mpi/tasks.cpp
View File

@ -70,7 +70,7 @@ void task_one(AGGenInstance &instance, NetworkState &current_state,\
int alloc, int two_alloc, int reduc_factor, int num_tasks, mpi::communicator &world,\ int alloc, int two_alloc, int reduc_factor, int num_tasks, mpi::communicator &world,\
mpi::communicator &tcomm){ mpi::communicator &tcomm){
std::cout << "Process rank " << world.rank() << " with " << alloc << " node(s) allocated has started Task 1." << std::endl; //std::cout << "Process rank " << world.rank() << " with " << alloc << " node(s) allocated has started Task 1." << std::endl;
std::vector<std::tuple<Exploit, AssetGroup>> appl_exploits; std::vector<std::tuple<Exploit, AssetGroup>> appl_exploits;
unsigned long esize = exploit_list.size(); unsigned long esize = exploit_list.size();
@ -135,51 +135,41 @@ void task_one(AGGenInstance &instance, NetworkState &current_state,\
//Distribute the appl_exploit list from the extra node in task 1 to all other nodes in this task //Distribute the appl_exploit list from the extra node in task 1 to all other nodes in this task
if (alloc > two_alloc){ if (alloc > two_alloc){
int has_data; int has_data;
//std::tuple<int, int> data_mod = std::make_tuple(0, 0); if (world.rank() == alloc){
if (world.rank() == alloc){ if (appl_exploits.size() > 0){
if (appl_exploits.size() > 0){ has_data = 1;
//std::get<0>(data_mod) = ceil((double)appl_exploits.size()/((double)tcomm.size()-1)); }
//std::get<1>(data_mod) = appl_exploits.size()%(tcomm.size()-1); else{
//data_mod = std::make_tuple(ceil((double)appl_exploits.size()/((double)tcomm.size()-1)), appl_exploits.size()%(tcomm.size()-1)); has_data = 0;
has_data = 1; }
} }
else{
has_data = 0;
}
}
//Convert world.rank() of alloc to tcomm rank by -1 //Convert world.rank() of alloc to tcomm rank by -1
broadcast(tcomm, has_data, alloc-1); broadcast(tcomm, has_data, alloc-1);
if(has_data==1){ if(has_data==1){
std::vector<std::vector<std::tuple<Exploit, AssetGroup>>> sub_partials; std::vector<std::vector<std::tuple<Exploit, AssetGroup>>> sub_partials;
std::vector<std::tuple<Exploit, AssetGroup>> partial_appl_exploits; std::vector<std::tuple<Exploit, AssetGroup>> partial_appl_exploits;
if (world.rank() == alloc){ if (world.rank() == alloc){
size_t num_data = appl_exploits.size()/(tcomm.size()-1); size_t num_data = appl_exploits.size()/(tcomm.size()-1);
size_t remain = appl_exploits.size()%(tcomm.size()-1); size_t remain = appl_exploits.size()%(tcomm.size()-1);
int begin = 0; int begin = 0;
int end = 0; int end = 0;
for (int i = 0; i < std::min((int)(tcomm.size()-1), (int)appl_exploits.size()); ++i){ for (int i = 0; i < std::min((int)(tcomm.size()-1), (int)appl_exploits.size()); ++i){
end += (remain > 0) ? (num_data + !!(remain--)) : num_data; end += (remain > 0) ? (num_data + !!(remain--)) : num_data;
sub_partials.push_back(std::vector<std::tuple<Exploit, AssetGroup>>(appl_exploits.begin()+begin, appl_exploits.begin()+end)); sub_partials.push_back(std::vector<std::tuple<Exploit, AssetGroup>>(appl_exploits.begin()+begin, appl_exploits.begin()+end));
begin = end; begin = end;
mpi::request scatter_req = tcomm.isend(i, 21, sub_partials.at(i)); mpi::request scatter_req = tcomm.isend(i, 21, sub_partials.at(i));
std::cout << "PROCESS " << world.rank() << " SENDING APPL EXPLOIT LIST OF SIZE " << sub_partials.at(i).size() << "TO TCOMM RANK " << i << " ORIGINAL LIST WAS SIZE " << appl_exploits.size() << std::endl; scatter_req.wait();
scatter_req.wait(); }
} }
} tcomm.barrier();
tcomm.barrier();
if(world.rank() < alloc){ if(world.rank() < alloc){
if(tcomm.iprobe(alloc-1, 21)){ if(tcomm.iprobe(alloc-1, 21)){
tcomm.recv(alloc-1, 21, partial_appl_exploits); tcomm.recv(alloc-1, 21, partial_appl_exploits);
std::cout << "PROCESS " << world.rank() << " RECEIVED APPL EXPLOIT LIST OF SIZE " << partial_appl_exploits.size() << " IN TASK 1" << std::endl; appl_exploits.insert(std::end(appl_exploits), std::begin(partial_appl_exploits), std::end(partial_appl_exploits));
appl_exploits.insert(std::end(appl_exploits), std::begin(partial_appl_exploits), std::end(partial_appl_exploits)); }
//for(auto itr=partial_appl_exploits.begin(); itr!=partial_appl_exploits.end(); itr++){
// auto index_r=std::distance(partial_appl_exploits.begin(),itr);
// appl_exploits.push_back(partial_appl_exploits.at(index_r));
//}
}
} }
} }
} }
@ -189,7 +179,7 @@ void task_one(AGGenInstance &instance, NetworkState &current_state,\
if (alloc > two_alloc) if (alloc > two_alloc)
skip_greatest = 1; skip_greatest = 1;
if(world.rank() <= (alloc - skip_greatest)){ if(world.rank() <= (alloc - skip_greatest)){
std::cout << "Process " << world.rank() << " sending applicable exploit list of size " << appl_exploits.size() <<\ //std::cout << "Process " << world.rank() << " sending applicable exploit list of size " << appl_exploits.size() <<\
" to Process " << send_check(world, world.rank() + alloc -1) << std::endl; " to Process " << send_check(world, world.rank() + alloc -1) << std::endl;
mpi::request appl_req = world.isend(send_check(world, world.rank() + alloc -1), 30, appl_exploits); mpi::request appl_req = world.isend(send_check(world, world.rank() + alloc -1), 30, appl_exploits);
mpi::request cs_req = world.isend(send_check(world, world.rank() + alloc -1), 40, current_state); mpi::request cs_req = world.isend(send_check(world, world.rank() + alloc -1), 40, current_state);
@ -202,7 +192,7 @@ void task_two(AGGenInstance &instance, int alloc, int two_alloc, boost::mpi::com
std::deque<NetworkState> &localFrontier, double mem_threshold, boost::mpi::communicator &ttwo_comm,\ std::deque<NetworkState> &localFrontier, double mem_threshold, boost::mpi::communicator &ttwo_comm,\
std::vector<std::string> ex_groups, std::unordered_map<size_t, int> &hash_map){ std::vector<std::string> ex_groups, std::unordered_map<size_t, int> &hash_map){
std::cout << "Process rank " << world.rank() << " with " << two_alloc <<\ //std::cout << "Process rank " << world.rank() << " with " << two_alloc <<\
" node(s) allocated has started Task 2 with local communicator rank of " << ttwo_comm.rank() << std::endl; " node(s) allocated has started Task 2 with local communicator rank of " << ttwo_comm.rank() << std::endl;
NetworkState current_state; NetworkState current_state;
@ -211,7 +201,7 @@ void task_two(AGGenInstance &instance, int alloc, int two_alloc, boost::mpi::com
world.recv(mpi::any_source, 30, appl_exploits); world.recv(mpi::any_source, 30, appl_exploits);
world.recv(mpi::any_source, 40, current_state); world.recv(mpi::any_source, 40, current_state);
std::cout << "Process " << world.rank() << " received Task 1 data with Appl exploit size " << appl_exploits.size() << std::endl; //std::cout << "Process " << world.rank() << " received Task 1 data with Appl exploit size " << appl_exploits.size() << std::endl;
//Check for new fact and new state that caused an update in the hash table and facts //Check for new fact and new state that caused an update in the hash table and facts
while(world.iprobe(mpi::any_source, 3) || world.iprobe(mpi::any_source, 4)){ while(world.iprobe(mpi::any_source, 3) || world.iprobe(mpi::any_source, 4)){
@ -228,11 +218,6 @@ void task_two(AGGenInstance &instance, int alloc, int two_alloc, boost::mpi::com
std::vector<std::tuple<Exploit, AssetGroup>> partial_appl_exploits; std::vector<std::tuple<Exploit, AssetGroup>> partial_appl_exploits;
//Don't think we need this? All nodes get their own appl_expl list
//if(ttwo_comm.size() > 1)
//mpi::scatter(ttwo_comm, partial_appl_exploits, appl_exploits.data(), 0);
//mpi::scatter(ttwo_comm, &partial_appl_exploits, appl_exploits, 0);
auto current_hash = current_state.get_hash(instance.facts); auto current_hash = current_state.get_hash(instance.facts);
std::map<std::string, int> group_fired; //Map to hold fired status per group std::map<std::string, int> group_fired; //Map to hold fired status per group
@ -251,16 +236,16 @@ void task_two(AGGenInstance &instance, int alloc, int two_alloc, boost::mpi::com
auto e = *itr; auto e = *itr;
egroup = std::get<0>(e).get_group(); egroup = std::get<0>(e).get_group();
int tflag = 0; int tflag = 0;
if (egroup != "null"){ if (egroup != "null"){
sync_vectors[egroup].push_back(e); sync_vectors[egroup].push_back(e);
if(ttwo_comm.rank() != 0){ if(ttwo_comm.rank() != 0){
std::cout << "NODE " << world.rank() << " HAD A SYNC EXPLOIT " << std::endl; itr = appl_exploits.erase(itr);
itr = appl_exploits.erase(itr); tflag = 1;
tflag = 1; }
} }
}
if(tflag == 0) if(tflag == 0)
itr++; itr++;
} }
@ -268,58 +253,39 @@ void task_two(AGGenInstance &instance, int alloc, int two_alloc, boost::mpi::com
for (auto map_group : ex_groups){ for (auto map_group : ex_groups){
if(sync_vectors[map_group].size() > 0){ if(sync_vectors[map_group].size() > 0){
mpi::request sync_req = ttwo_comm.isend(0, 9, std::make_tuple(map_group, sync_vectors[map_group])); mpi::request sync_req = ttwo_comm.isend(0, 9, std::make_tuple(map_group, sync_vectors[map_group]));
std::cout << "NODE " << world.rank() << " SENDING SYNC APPL SIZE OF " << sync_vectors[map_group].size() << std::endl; sync_req.wait();
sync_req.wait(); sync_vectors[map_group].clear();
sync_vectors[map_group].clear();
} }
} }
/*
for(auto itr = appl_exploits.begin(); itr != appl_exploits.end();){
egroup = std::get<0>(*itr).get_group();
if (egroup != "null"){
itr = appl_exploits.erase(itr);
}
else{
itr++;
}
}*/
} }
ttwo_comm.barrier(); ttwo_comm.barrier();
if(ttwo_comm.rank() == 0 && ttwo_comm.size() > 1){ if(ttwo_comm.rank() == 0 && ttwo_comm.size() > 1){
//Attempt to distribute workload evenly has unintended effects since we don't know which Task 1 data goes where: it could all go to this node.
//for(auto itr = appl_exploits.begin(); itr != appl_exploits.end();){
// itr = appl_exploits.erase(itr);
//}
//for (int r = 0; r < ex_groups.size() * (ttwo_comm.size()-1); r++){
while(ttwo_comm.iprobe(mpi::any_source, 9)){ while(ttwo_comm.iprobe(mpi::any_source, 9)){
std::tuple<std::string, std::vector<std::tuple<Exploit, AssetGroup>>> sync_recv; std::tuple<std::string, std::vector<std::tuple<Exploit, AssetGroup>>> sync_recv;
ttwo_comm.recv(mpi::any_source, 9, sync_recv); ttwo_comm.recv(mpi::any_source, 9, sync_recv);
partial_appl_exploits = std::get<1>(sync_recv); partial_appl_exploits = std::get<1>(sync_recv);
appl_exploits.insert(std::end(appl_exploits), std::begin(partial_appl_exploits), std::end(partial_appl_exploits));
std::cout << "TTWO COMM RANK 0 HAS RECEIVED AN APPL EXPLOIT LIST SIZE OF " << partial_appl_exploits.size() << " RESULTING IN A TOTAL SIZE OF " << appl_exploits.size() << std::endl; appl_exploits.insert(std::end(appl_exploits), std::begin(partial_appl_exploits), std::end(partial_appl_exploits));
sync_vectors[std::get<0>(sync_recv)].insert(std::end(sync_vectors[std::get<0>(sync_recv)]), std::begin(partial_appl_exploits), std::end(partial_appl_exploits)); sync_vectors[std::get<0>(sync_recv)].insert(std::end(sync_vectors[std::get<0>(sync_recv)]), std::begin(partial_appl_exploits), std::end(partial_appl_exploits));
//for(auto itr=partial_appl_exploits.begin(); itr!=partial_appl_exploits.end(); itr++){ }
// auto index_r=std::distance(partial_appl_exploits.begin(),itr);
// appl_exploits.push_back(partial_appl_exploits.at(index_r));
// }
}
} }
//loop through the vector //loop through the vector
for(auto itr=appl_exploits.begin(); itr!=appl_exploits.end(); itr++){ for(auto itr=appl_exploits.begin(); itr!=appl_exploits.end(); itr++){
//Check for new fact and new state that caused an update in the hash table and facts //Check for new fact and new state that caused an update in the hash table and facts
while(world.iprobe(mpi::any_source, 3) || world.iprobe(mpi::any_source, 4)){ while(world.iprobe(mpi::any_source, 3) || world.iprobe(mpi::any_source, 4)){
NetworkState update_state; NetworkState update_state;
Quality update_fact; Quality update_fact;
world.recv(mpi::any_source, 3, update_state); world.recv(mpi::any_source, 3, update_state);
world.recv(mpi::any_source, 4, update_fact); world.recv(mpi::any_source, 4, update_fact);
instance.facts.hash_table[update_state.compound_assign(update_fact)]=instance.facts.size(); //Update
instance.facts.length++; instance.facts.hash_table[update_state.compound_assign(update_fact)]=instance.facts.size();
instance.facts.str_vector.push_back(update_state.compound_assign(update_fact)); instance.facts.length++;
} instance.facts.str_vector.push_back(update_state.compound_assign(update_fact));
}
auto e = *itr; auto e = *itr;
auto exploit = std::get<0>(e); auto exploit = std::get<0>(e);
@ -343,7 +309,7 @@ void task_two(AGGenInstance &instance, int alloc, int two_alloc, boost::mpi::com
break; break;
} }
} }
std::cout << "Sync exploit size " << sync_exploits.size() << " at Node " << world.rank() << " out of a total of " << appl_exploits.size() << std::endl; //std::cout << "Sync exploit size " << sync_exploits.size() << " at Node " << world.rank() << " out of a total of " << appl_exploits.size() << std::endl;
for(auto sync_itr=sync_exploits.begin(); sync_itr!=sync_exploits.end(); sync_itr++){ for(auto sync_itr=sync_exploits.begin(); sync_itr!=sync_exploits.end(); sync_itr++){
e = *sync_itr; e = *sync_itr;
exploit = std::get<0>(e); exploit = std::get<0>(e);
@ -385,8 +351,8 @@ void task_two(AGGenInstance &instance, int alloc, int two_alloc, boost::mpi::com
{ {
mpi::request ns_req = world.isend(w, 3, new_state); mpi::request ns_req = world.isend(w, 3, new_state);
mpi::request fact_req = world.isend(w, 4, fact); mpi::request fact_req = world.isend(w, 4, fact);
ns_req.wait(); ns_req.wait();
fact_req.wait(); fact_req.wait();
} }
} }
} }
@ -418,29 +384,29 @@ void task_two(AGGenInstance &instance, int alloc, int two_alloc, boost::mpi::com
auto hash_num = new_state.get_hash(instance.facts); auto hash_num = new_state.get_hash(instance.facts);
if (hash_num == current_hash){ if (hash_num == current_hash){
std::cout << "Same hash." << std::endl; //std::cout << "Same hash." << std::endl;
continue; continue;
} }
//<6 Node Edge Case Prevention: Node 0 unable to execute task 3 //<6 Node Edge Case Prevention: Node 0 unable to execute task 3
if(world.rank() != 0){ if(world.rank() != 0){
std::cout << "Node " << world.rank() << " sending new state data to Node 0" << std::endl; //std::cout << "Node " << world.rank() << " sending new state data to Node 0" << std::endl;
mpi::request ns_req = world.isend(0, 5, new_state); mpi::request ns_req = world.isend(0, 5, new_state);
mpi::request cs_req = world.isend(0, 6, current_state); mpi::request cs_req = world.isend(0, 6, current_state);
mpi::request ex_req = world.isend(0, 10, exploit); mpi::request ex_req = world.isend(0, 10, exploit);
mpi::request ag_req = world.isend(0, 11, assetGroup); mpi::request ag_req = world.isend(0, 11, assetGroup);
ns_req.wait(); ns_req.wait();
cs_req.wait(); cs_req.wait();
ex_req.wait(); ex_req.wait();
ag_req.wait(); ag_req.wait();
} }
else { else {
task_three(instance, new_state, localFrontier, mem_threshold, world,\ task_three(instance, new_state, localFrontier, mem_threshold, world,\
alloc, two_alloc, current_state, exploit, assetGroup, hash_map); alloc, two_alloc, current_state, exploit, assetGroup, hash_map);
} }
} }
else{ else{
std::cout << "Breaking." << std::endl; //std::cout << "Breaking." << std::endl;
break; break;
} }
} }
@ -450,7 +416,7 @@ void task_three(AGGenInstance &instance, NetworkState &new_state, std::deque<Net
double mem_threshold, boost::mpi::communicator &world, int alloc, int two_alloc, NetworkState &current_state,\ double mem_threshold, boost::mpi::communicator &world, int alloc, int two_alloc, NetworkState &current_state,\
Exploit &exploit, AssetGroup &assetGroup, std::unordered_map<size_t, int> &hash_map){ Exploit &exploit, AssetGroup &assetGroup, std::unordered_map<size_t, int> &hash_map){
std::cout << "Started Task 3." << std::endl; //std::cout << "Started Task 3." << std::endl;
auto hash_num = new_state.get_hash(instance.facts); auto hash_num = new_state.get_hash(instance.facts);
//although local frontier is updated, the global hash is also updated to avoid testing on explored states. //although local frontier is updated, the global hash is also updated to avoid testing on explored states.
@ -478,8 +444,8 @@ void task_three(AGGenInstance &instance, NetworkState &new_state, std::deque<Net
if (f_alpha >= (mem_threshold/2)) { if (f_alpha >= (mem_threshold/2)) {
//std::cout << "Frontier Alpha prior to database storing: " << f_alpha << std::endl; //std::cout << "Frontier Alpha prior to database storing: " << f_alpha << std::endl;
mpi::request ns_req = world.isend(send_check(world, alloc+two_alloc+1), 50, new_state); mpi::request ns_req = world.isend(send_check(world, alloc+two_alloc+1), 50, new_state);
ns_req.wait(); ns_req.wait();
//save_unexplored_to_db(new_state); //save_unexplored_to_db(new_state);
if (!localFrontier.empty()) if (!localFrontier.empty())
f_alpha = (static_cast<double>(localFrontier.size()) * (localFrontier.back().get_size()))/tot_sys_mem; f_alpha = (static_cast<double>(localFrontier.size()) * (localFrontier.back().get_size()))/tot_sys_mem;
else else
@ -490,8 +456,8 @@ void task_three(AGGenInstance &instance, NetworkState &new_state, std::deque<Net
//Store new state in database to ensure proper ordering of the FIFO queue //Store new state in database to ensure proper ordering of the FIFO queue
else if (!unex_empty()){ else if (!unex_empty()){
mpi::request ns_req = world.isend(send_check(world, alloc+two_alloc+1), 50, new_state); mpi::request ns_req = world.isend(send_check(world, alloc+two_alloc+1), 50, new_state);
ns_req.wait(); ns_req.wait();
//save_unexplored_to_db(new_state); //save_unexplored_to_db(new_state);
} }
//Otherwise, we can just store in memory //Otherwise, we can just store in memory
@ -504,8 +470,8 @@ void task_three(AGGenInstance &instance, NetworkState &new_state, std::deque<Net
mpi::request fb_req = world.isend(send_check(world, alloc+two_alloc), 7, instance.factbases); mpi::request fb_req = world.isend(send_check(world, alloc+two_alloc), 7, instance.factbases);
mpi::request ed_req = world.isend(send_check(world, alloc+two_alloc), 8, instance.edges); mpi::request ed_req = world.isend(send_check(world, alloc+two_alloc), 8, instance.edges);
//save_ag_to_db(instance, true); //save_ag_to_db(instance, true);
fb_req.wait(); fb_req.wait();
ed_req.wait(); ed_req.wait();
//Clear vectors and free memory //Clear vectors and free memory
std::vector<Factbase>().swap(instance.factbases); std::vector<Factbase>().swap(instance.factbases);
std::vector<FactbaseItems>().swap(instance.factbase_items); std::vector<FactbaseItems>().swap(instance.factbase_items);
@ -524,11 +490,11 @@ void task_three(AGGenInstance &instance, NetworkState &new_state, std::deque<Net
instance.edges.push_back(ed); instance.edges.push_back(ed);
} //END if (hash_map.find(hash_num) == hash_map.end()) } //END if (hash_map.find(hash_num) == hash_map.end())
else { else{
int id = hash_map[hash_num]; int id = hash_map[hash_num];
Edge ed(current_state.get_id(), id, exploit, assetGroup); Edge ed(current_state.get_id(), id, exploit, assetGroup);
ed.set_id(); ed.set_id();
instance.edges.push_back(ed); instance.edges.push_back(ed);
} }
} }

7
src/mpi/tuple.h
View File

@ -1,10 +1,3 @@
/*
* tuple.h
*
* Created on: Jan 29, 2013
* Author: vincent
*/
#ifndef ATLAS_TUPLE_H_ #ifndef ATLAS_TUPLE_H_
#define ATLAS_TUPLE_H_ #define ATLAS_TUPLE_H_

7
src/mpi/type_traits.h
View File

@ -1,10 +1,3 @@
/*
* type_traits.h
*
* Created on: Apr 1, 2013
* Author: vincent
*/
#ifndef ATLAS_TYPE_TRAITS_H_ #ifndef ATLAS_TYPE_TRAITS_H_
#define ATLAS_TYPE_TRAITS_H_ #define ATLAS_TYPE_TRAITS_H_